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How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography
Recently, algorithms capable of assessing the severity of Coronary Artery Disease (CAD) in form of the Coronary Artery Disease-Reporting and Data System (CAD-RADS) grade from Coronary Computed Tomography Angiography (CCTA) scans using Deep Learning (DL) were proposed. Before considering to apply the...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9925789/ https://www.ncbi.nlm.nih.gov/pubmed/36781953 http://dx.doi.org/10.1038/s41598-023-29347-9 |
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author | Denzinger, Felix Wels, Michael Breininger, Katharina Taubmann, Oliver Mühlberg, Alexander Allmendinger, Thomas Gülsün, Mehmet A. Schöbinger, Max André, Florian Buss, Sebastian J. Görich, Johannes Sühling, Michael Maier, Andreas |
author_facet | Denzinger, Felix Wels, Michael Breininger, Katharina Taubmann, Oliver Mühlberg, Alexander Allmendinger, Thomas Gülsün, Mehmet A. Schöbinger, Max André, Florian Buss, Sebastian J. Görich, Johannes Sühling, Michael Maier, Andreas |
author_sort | Denzinger, Felix |
collection | PubMed |
description | Recently, algorithms capable of assessing the severity of Coronary Artery Disease (CAD) in form of the Coronary Artery Disease-Reporting and Data System (CAD-RADS) grade from Coronary Computed Tomography Angiography (CCTA) scans using Deep Learning (DL) were proposed. Before considering to apply these algorithms in clinical practice, their robustness regarding different commonly used Computed Tomography (CT)-specific image formation parameters—including denoising strength, slab combination, and reconstruction kernel—needs to be evaluated. For this study, we reconstructed a data set of 500 patient CCTA scans under seven image formation parameter configurations. We select one default configuration and evaluate how varying individual parameters impacts the performance and stability of a typical algorithm for automated CAD assessment from CCTA. This algorithm consists of multiple preprocessing and a DL prediction step. We evaluate the influence of the parameter changes on the entire pipeline and additionally on only the DL step by propagating the centerline extraction results of the default configuration to all others. We consider the standard deviation of the CAD severity prediction grade difference between the default and variation configurations to assess the stability w.r.t. parameter changes. For the full pipeline we observe slight instability (± 0.226 CAD-RADS) for all variations. Predictions are more stable with centerlines propagated from the default to the variation configurations (± 0.122 CAD-RADS), especially for differing denoising strengths (± 0.046 CAD-RADS). However, stacking slabs with sharp boundaries instead of mixing slabs in overlapping regions (called true stack ± 0.313 CAD-RADS) and increasing the sharpness of the reconstruction kernel (± 0.150 CAD-RADS) leads to unstable predictions. Regarding the clinically relevant tasks of excluding CAD (called rule-out; AUC default 0.957, min 0.937) and excluding obstructive CAD (called hold-out; AUC default 0.971, min 0.964) the performance remains on a high level for all variations. Concluding, an influence of reconstruction parameters on the predictions is observed. Especially, scans reconstructed with the true stack parameter need to be treated with caution when using a DL-based method. Also, reconstruction kernels which are underrepresented in the training data increase the prediction uncertainty. |
format | Online Article Text |
id | pubmed-9925789 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99257892023-02-15 How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography Denzinger, Felix Wels, Michael Breininger, Katharina Taubmann, Oliver Mühlberg, Alexander Allmendinger, Thomas Gülsün, Mehmet A. Schöbinger, Max André, Florian Buss, Sebastian J. Görich, Johannes Sühling, Michael Maier, Andreas Sci Rep Article Recently, algorithms capable of assessing the severity of Coronary Artery Disease (CAD) in form of the Coronary Artery Disease-Reporting and Data System (CAD-RADS) grade from Coronary Computed Tomography Angiography (CCTA) scans using Deep Learning (DL) were proposed. Before considering to apply these algorithms in clinical practice, their robustness regarding different commonly used Computed Tomography (CT)-specific image formation parameters—including denoising strength, slab combination, and reconstruction kernel—needs to be evaluated. For this study, we reconstructed a data set of 500 patient CCTA scans under seven image formation parameter configurations. We select one default configuration and evaluate how varying individual parameters impacts the performance and stability of a typical algorithm for automated CAD assessment from CCTA. This algorithm consists of multiple preprocessing and a DL prediction step. We evaluate the influence of the parameter changes on the entire pipeline and additionally on only the DL step by propagating the centerline extraction results of the default configuration to all others. We consider the standard deviation of the CAD severity prediction grade difference between the default and variation configurations to assess the stability w.r.t. parameter changes. For the full pipeline we observe slight instability (± 0.226 CAD-RADS) for all variations. Predictions are more stable with centerlines propagated from the default to the variation configurations (± 0.122 CAD-RADS), especially for differing denoising strengths (± 0.046 CAD-RADS). However, stacking slabs with sharp boundaries instead of mixing slabs in overlapping regions (called true stack ± 0.313 CAD-RADS) and increasing the sharpness of the reconstruction kernel (± 0.150 CAD-RADS) leads to unstable predictions. Regarding the clinically relevant tasks of excluding CAD (called rule-out; AUC default 0.957, min 0.937) and excluding obstructive CAD (called hold-out; AUC default 0.971, min 0.964) the performance remains on a high level for all variations. Concluding, an influence of reconstruction parameters on the predictions is observed. Especially, scans reconstructed with the true stack parameter need to be treated with caution when using a DL-based method. Also, reconstruction kernels which are underrepresented in the training data increase the prediction uncertainty. Nature Publishing Group UK 2023-02-13 /pmc/articles/PMC9925789/ /pubmed/36781953 http://dx.doi.org/10.1038/s41598-023-29347-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Denzinger, Felix Wels, Michael Breininger, Katharina Taubmann, Oliver Mühlberg, Alexander Allmendinger, Thomas Gülsün, Mehmet A. Schöbinger, Max André, Florian Buss, Sebastian J. Görich, Johannes Sühling, Michael Maier, Andreas How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title | How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title_full | How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title_fullStr | How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title_full_unstemmed | How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title_short | How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
title_sort | how scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9925789/ https://www.ncbi.nlm.nih.gov/pubmed/36781953 http://dx.doi.org/10.1038/s41598-023-29347-9 |
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