Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site

A gene of unknown function, Gohir.A03G007700.1 (gene ID: Gohir.A03G007700_UTX-TM1_v2.1; transcript ID: Gohir.A03G007700.1_UTX-TM1_v2.1), identified in Gossypium hirsutum was studied using bioinformatic analyses of the sequence and structure of its encoded protein. Results from domain prediction, con...

Descripción completa

Detalles Bibliográficos
Autores principales: Smith, Emma R., Caulley, Lauryn R., Storm, Amanda R, Hulse-Kemp, Amanda M., Stoeckman, Angela K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Caltech Library 2023
Materias:
New Finding
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9926292/
https://www.ncbi.nlm.nih.gov/pubmed/36798590
http://dx.doi.org/10.17912/micropub.biology.000669
_version_ 1784888248715182080
author Smith, Emma R.
Caulley, Lauryn R.
Storm, Amanda R
Hulse-Kemp, Amanda M.
Stoeckman, Angela K.
author_facet Smith, Emma R.
Caulley, Lauryn R.
Storm, Amanda R
Hulse-Kemp, Amanda M.
Stoeckman, Angela K.
author_sort Smith, Emma R.
collection PubMed
description A gene of unknown function, Gohir.A03G007700.1 (gene ID: Gohir.A03G007700_UTX-TM1_v2.1; transcript ID: Gohir.A03G007700.1_UTX-TM1_v2.1), identified in Gossypium hirsutum was studied using bioinformatic analyses of the sequence and structure of its encoded protein. Results from domain prediction, conserved residues and structure comparison indicate the encoded plant-specific protein (UniProt A0A1U8N485) is part of the VAN3-binding protein family with a conserved phosphoinositide-binding site. Homology comparison suggests functional similarity with Arabidopsis FORKED-like FL5 and 6, which localize to the Golgi apparatus and are linked to vein development and leaf size phenotypes.
format Online
Article
Text
id pubmed-9926292
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Caltech Library
record_format MEDLINE/PubMed
spelling pubmed-99262922023-02-15 Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site Smith, Emma R. Caulley, Lauryn R. Storm, Amanda R Hulse-Kemp, Amanda M. Stoeckman, Angela K. MicroPubl Biol New Finding A gene of unknown function, Gohir.A03G007700.1 (gene ID: Gohir.A03G007700_UTX-TM1_v2.1; transcript ID: Gohir.A03G007700.1_UTX-TM1_v2.1), identified in Gossypium hirsutum was studied using bioinformatic analyses of the sequence and structure of its encoded protein. Results from domain prediction, conserved residues and structure comparison indicate the encoded plant-specific protein (UniProt A0A1U8N485) is part of the VAN3-binding protein family with a conserved phosphoinositide-binding site. Homology comparison suggests functional similarity with Arabidopsis FORKED-like FL5 and 6, which localize to the Golgi apparatus and are linked to vein development and leaf size phenotypes. Caltech Library 2023-01-31 /pmc/articles/PMC9926292/ /pubmed/36798590 http://dx.doi.org/10.17912/micropub.biology.000669 Text en Copyright: © 2023 by the authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle New Finding
Smith, Emma R.
Caulley, Lauryn R.
Storm, Amanda R
Hulse-Kemp, Amanda M.
Stoeckman, Angela K.
Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title_full Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title_fullStr Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title_full_unstemmed Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title_short Gossypium hirsutum gene of unknown function Gohir.A03G007700.1 encodes a potential VAN3-binding protein with a phosphoinositide-binding site
title_sort gossypium hirsutum gene of unknown function gohir.a03g007700.1 encodes a potential van3-binding protein with a phosphoinositide-binding site
topic New Finding
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9926292/
https://www.ncbi.nlm.nih.gov/pubmed/36798590
http://dx.doi.org/10.17912/micropub.biology.000669
work_keys_str_mv AT smithemmar gossypiumhirsutumgeneofunknownfunctiongohira03g0077001encodesapotentialvan3bindingproteinwithaphosphoinositidebindingsite
AT caulleylaurynr gossypiumhirsutumgeneofunknownfunctiongohira03g0077001encodesapotentialvan3bindingproteinwithaphosphoinositidebindingsite
AT stormamandar gossypiumhirsutumgeneofunknownfunctiongohira03g0077001encodesapotentialvan3bindingproteinwithaphosphoinositidebindingsite
AT hulsekempamandam gossypiumhirsutumgeneofunknownfunctiongohira03g0077001encodesapotentialvan3bindingproteinwithaphosphoinositidebindingsite
AT stoeckmanangelak gossypiumhirsutumgeneofunknownfunctiongohira03g0077001encodesapotentialvan3bindingproteinwithaphosphoinositidebindingsite

Ejemplares similares