Cargando…

Rapid Identification of Relevant Microbial Strains by Identifying Multiple Marker Single Nucleotide Polymorphisms via Amplicon Sequencing: Epidemic Monkeypox Virus as a Proof of Concept

Despite the proven value of applying genomic data for epidemiological purposes, commonly used high-throughput sequencing formats are not adapted to the response times required to intervene and finally control outbreaks. In this study, we propose a fast alternative to whole-genome sequencing (WGS) to...

Descripción completa

Detalles Bibliográficos
Autores principales:	Buenestado-Serrano, Sergio, Herranz, Marta, Palomino-Cabrera, Rosalía, Rodríguez-Grande, Cristina, Peñas-Utrilla, Daniel, Molero-Salinas, Andrea, Veintimilla, Cristina, Catalán, Pilar, Alonso, Roberto, Muñoz, Patricia, Pérez-Lago, Laura, García de Viedma, Darío
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2023
Materias:	Observation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9927504/ https://www.ncbi.nlm.nih.gov/pubmed/36602352 http://dx.doi.org/10.1128/spectrum.04196-22

Ejemplares similares

Early SARS-CoV-2 Reinfections Involving the Same or Different Genomic Lineages, Spain
por: Rodríguez-Grande, Cristina, et al.
Publicado: (2023)

Shared Mutations in Emerging SARS-CoV-2 Circulating Variants May Lead to Reverse Transcription-PCR (RT-PCR)-Based Misidentification of B.1.351 and P.1 Variants of Concern
por: Losada, Carmen, et al.
Publicado: (2021)

SARS-CoV-2 B.1.1.7 Decline Is Not Driven by the Introduction of a More Successful Variant
por: Rodríguez-Grande, Cristina, et al.
Publicado: (2021)

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved
por: Peñas-Utrilla, Daniel, et al.
Publicado: (2023)

Frequent Emergence of Resistance Mutations Following Complex Intra-Host Genomic Dynamics in SARS-CoV-2 Patients Receiving Sotrovimab
por: Palomino-Cabrera, Rosalía, et al.
Publicado: (2023)

A mutation responsible for impaired detection by the Xpert SARS-CoV-2 assay independently emerged in different lineages during the SARS-CoV-2 pandemic
por: Peñas-Utrilla, Daniel, et al.
Publicado: (2023)

Nosocomial Transmission of SARS-CoV-2 Involving Vaccinated Health Care Workers
por: Pérez-Lago, Laura, et al.
Publicado: (2022)

Alternative molecular and genomic strategies to provide a rapid response to alerts concerning the introduction of new emerging SARS-CoV-2 variants: the Omicron alert
por: Herranz, Marta, et al.
Publicado: (2023)

The relevance of multiple clinical specimens in the diagnosis of monkeypox virus, Spain, June 2022
por: Veintimilla, Cristina, et al.
Publicado: (2022)

Machine learning classification by fitting amplicon sequences to existing OTUs
por: Armour, Courtney R., et al.
Publicado: (2023)

Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters
por: Schloss, Patrick D.
Publicado: (2021)

First importations of SARS-CoV-2 P.1 and P.2 variants from Brazil to Spain and early community transmission
por: Sola Campoy, Pedro J., et al.
Publicado: (2022)

First importations of SARS-CoV-2 P.1 and P.2 variants from Brazil to Spain and early community transmission
por: Sola Campoy, Pedro J., et al.
Publicado: (2022)

Unique Tandem Repeats in the Inverted Terminal Repeat Regions of Monkeypox Viruses
por: Desingu, Perumal Arumugam, et al.
Publicado: (2023)

Detection of Minority Variants and Mixed Infections in Mycobacterium tuberculosis by Direct Whole-Genome Sequencing on Noncultured Specimens Using a Specific-DNA Capture Strategy
por: Lozano, Nuria, et al.
Publicado: (2021)

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
por: Amir, Amnon, et al.
Publicado: (2017)

Inference of Active Viral Replication in Cases with Sustained Positive Reverse Transcription-PCR Results for SARS-CoV-2
por: Rodríguez-Grande, Cristina, et al.
Publicado: (2021)

Systematic Genomic and Clinical Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 Reinfections and Recurrences Involving the Same Strain
por: Rodríguez-Grande, Cristina, et al.
Publicado: (2022)

Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus
por: Chen, Nicholas F.G., et al.
Publicado: (2023)

Deep learning vs conventional learning algorithms for clinical prediction in Crohn's disease: A proof-of-concept study
por: Con, Danny, et al.
Publicado: (2021)

Demographic, clinical and microbiological characteristics of the first 30 human monkeypox confirmed cases attended in a tertiary hospital in Madrid (Spain), during the May-June 2022 international outbreak
por: Cobos, Alejandro, et al.
Publicado: (2023)

Clostridial Butyrate Biosynthesis Enzymes Are Significantly Depleted in the Gut Microbiota of Nonobese Diabetic Mice
por: Tanca, Alessandro, et al.
Publicado: (2018)

HIPPOCRATES(® )project: A proof of concept of a collaborative program for hepatitis C virus micro-elimination in a prison setting
por: Gaspar, Rui, et al.
Publicado: (2020)

Polymorphism AGT2 (rs4762) is involved in the development of dermatologic events: Proof-of-concept in hepatocellular carcinoma patients treated with sorafenib
por: Sapena, Víctor, et al.
Publicado: (2022)

Rapid Amplicon Nanopore Sequencing (RANS) for the Differential Diagnosis of Monkeypox Virus and Other Vesicle-Forming Pathogens
por: Israeli, Ofir, et al.
Publicado: (2022)

The Caspofungin Paradoxical Effect is a Tolerant “Eagle Effect” in the Filamentous Fungal Pathogen Aspergillus fumigatus
por: Valero, Clara, et al.
Publicado: (2022)

Shigella-Induced Emergency Granulopoiesis Protects Zebrafish Larvae from Secondary Infection
por: Willis, Alexandra R., et al.
Publicado: (2018)

Multistate Modeling of Clinical Trajectories and Outcomes in the ICU: A Proof-of-Concept Evaluation of Acute Kidney Injury Among Critically Ill Patients With COVID-19
por: Lyons, Patrick G., et al.
Publicado: (2022)

Carbapenem Resistance in Acinetobacter nosocomialis and Acinetobacter junii Conferred by Acquisition of bla(OXA-24/40) and Genetic Characterization of the Transmission Mechanism between Acinetobacter Genomic Species
por: Lasarte-Monterrubio, Cristina, et al.
Publicado: (2022)

Normal Ranges of Thiopurine Methyltransferase Activity Do Not Affect Thioguanine Nucleotide Concentrations With Azathioprine Therapy in Inflammatory Bowel Disease
por: Jonason, David E, et al.
Publicado: (2020)

Unraveling the pathophysiology of lower-limb postthrombotic syndrome in adolescents: a proof-of-concept study
por: Avila, M. Laura, et al.
Publicado: (2023)

Intracellular Mycobacterium leprae Utilizes Host Glucose as a Carbon Source in Schwann Cells
por: Borah, Khushboo, et al.
Publicado: (2019)

Monkeypox
por: Mitjà, Oriol, et al.
Publicado: (2023)

A One Health approach revealed the long-term role of Mycobacterium caprae as the hidden cause of human tuberculosis in a region of Spain, 2003 to 2022
por: Martínez-Lirola, Miguel, et al.
Publicado: (2023)

Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer
por: Whitford, Whitney, et al.
Publicado: (2022)

Identification of grapevine clones via high-throughput amplicon sequencing: a proof-of-concept study
por: Urra, Claudio, et al.
Publicado: (2023)

Mortality associated with hepatitis C and hepatitis B virus infection: A nationwide study on multiple causes of death data
por: Fedeli, Ugo, et al.
Publicado: (2017)

Information Encoded by the Flavivirus Genomes beyond the Nucleotide Sequence
por: Ramos-Lorente, Sara, et al.
Publicado: (2021)

Nucleotide sequence of the thymidine kinase gene region of monkeypox and variola viruses
por: Esposito, Joseph J., et al.
Publicado: (1984)

Iptacopan monotherapy in patients with paroxysmal nocturnal hemoglobinuria: a 2-cohort open-label proof-of-concept study
por: Jang, Jun Ho, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_b85vuqsdhqs8f72l7sejcjd2b3