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Cotton leaf segmentation with composite backbone architecture combining convolution and attention

Plant leaf segmentation, especially leaf edge accurate recognition, is the data support for automatically measuring plant phenotypic parameters. However, adjusting the backbone in the current cutting-edge segmentation model for cotton leaf segmentation applications requires various trial and error c...

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Autores principales: Yan, Jingkun, Yan, Tianying, Ye, Weixin, Lv, Xin, Gao, Pan, Xu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9927646/
https://www.ncbi.nlm.nih.gov/pubmed/36798703
http://dx.doi.org/10.3389/fpls.2023.1111175
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author Yan, Jingkun
Yan, Tianying
Ye, Weixin
Lv, Xin
Gao, Pan
Xu, Wei
author_facet Yan, Jingkun
Yan, Tianying
Ye, Weixin
Lv, Xin
Gao, Pan
Xu, Wei
author_sort Yan, Jingkun
collection PubMed
description Plant leaf segmentation, especially leaf edge accurate recognition, is the data support for automatically measuring plant phenotypic parameters. However, adjusting the backbone in the current cutting-edge segmentation model for cotton leaf segmentation applications requires various trial and error costs (e.g., expert experience and computing costs). Thus, a simple and effective semantic segmentation architecture (our model) based on the composite backbone was proposed, considering the computational requirements of the mainstream Transformer backbone integrating attention mechanism. The composite backbone was composed of CoAtNet and Xception. CoAtNet integrated the attention mechanism of the Transformers into the convolution operation. The experimental results showed that our model outperformed the benchmark segmentation models PSPNet, DANet, CPNet, and DeepLab v3+ on the cotton leaf dataset, especially on the leaf edge segmentation (MIoU: 0.940, BIoU: 0.608). The composite backbone of our model integrated the convolution of the convolutional neural networks and the attention of the Transformers, which alleviated the computing power requirements of the Transformers under excellent performance. Our model reduces the trial and error cost of adjusting the segmentation model architecture for specific agricultural applications and provides a potential scheme for high-throughput phenotypic feature detection of plants.
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spelling pubmed-99276462023-02-15 Cotton leaf segmentation with composite backbone architecture combining convolution and attention Yan, Jingkun Yan, Tianying Ye, Weixin Lv, Xin Gao, Pan Xu, Wei Front Plant Sci Plant Science Plant leaf segmentation, especially leaf edge accurate recognition, is the data support for automatically measuring plant phenotypic parameters. However, adjusting the backbone in the current cutting-edge segmentation model for cotton leaf segmentation applications requires various trial and error costs (e.g., expert experience and computing costs). Thus, a simple and effective semantic segmentation architecture (our model) based on the composite backbone was proposed, considering the computational requirements of the mainstream Transformer backbone integrating attention mechanism. The composite backbone was composed of CoAtNet and Xception. CoAtNet integrated the attention mechanism of the Transformers into the convolution operation. The experimental results showed that our model outperformed the benchmark segmentation models PSPNet, DANet, CPNet, and DeepLab v3+ on the cotton leaf dataset, especially on the leaf edge segmentation (MIoU: 0.940, BIoU: 0.608). The composite backbone of our model integrated the convolution of the convolutional neural networks and the attention of the Transformers, which alleviated the computing power requirements of the Transformers under excellent performance. Our model reduces the trial and error cost of adjusting the segmentation model architecture for specific agricultural applications and provides a potential scheme for high-throughput phenotypic feature detection of plants. Frontiers Media S.A. 2023-01-31 /pmc/articles/PMC9927646/ /pubmed/36798703 http://dx.doi.org/10.3389/fpls.2023.1111175 Text en Copyright © 2023 Yan, Yan, Ye, Lv, Gao and Xu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Yan, Jingkun
Yan, Tianying
Ye, Weixin
Lv, Xin
Gao, Pan
Xu, Wei
Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title_full Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title_fullStr Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title_full_unstemmed Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title_short Cotton leaf segmentation with composite backbone architecture combining convolution and attention
title_sort cotton leaf segmentation with composite backbone architecture combining convolution and attention
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9927646/
https://www.ncbi.nlm.nih.gov/pubmed/36798703
http://dx.doi.org/10.3389/fpls.2023.1111175
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