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A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images
To accurately identify atoms on noisy transmission electron microscope images, a deep learning (DL) approach is employed to estimate the map of probabilities at each pixel for being an atom with element discernment. Thanks to a delicately-designed loss function and the ability to extract features, t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929221/ https://www.ncbi.nlm.nih.gov/pubmed/36788257 http://dx.doi.org/10.1038/s41598-023-29606-9 |
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author | Chen, Yuan Liu, Shangpeng Tong, Peiran Huang, Ying Tian, He Lin, Fang |
author_facet | Chen, Yuan Liu, Shangpeng Tong, Peiran Huang, Ying Tian, He Lin, Fang |
author_sort | Chen, Yuan |
collection | PubMed |
description | To accurately identify atoms on noisy transmission electron microscope images, a deep learning (DL) approach is employed to estimate the map of probabilities at each pixel for being an atom with element discernment. Thanks to a delicately-designed loss function and the ability to extract features, the proposed DL networks can be trained by a small dataset created from approximately 30 experimental images, each with a size of 256 × 256 pixels(2). The accuracy and robustness of the network were verified by resolving the structural defects of graphene and polar structures in PbTiO(3)/SrTiO(3) multilayers from both the general TEM images and their imitated images on which intensities of some pixels lost randomly. Such a network has the potential to identify atoms from very few images of beam-sensitive material and explosive images recorded in a dynamical atomic process. The idea of using a small-dataset-trained DL framework to resolve a specific problem may prove instructive for practical DL applications in various fields. |
format | Online Article Text |
id | pubmed-9929221 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99292212023-02-16 A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images Chen, Yuan Liu, Shangpeng Tong, Peiran Huang, Ying Tian, He Lin, Fang Sci Rep Article To accurately identify atoms on noisy transmission electron microscope images, a deep learning (DL) approach is employed to estimate the map of probabilities at each pixel for being an atom with element discernment. Thanks to a delicately-designed loss function and the ability to extract features, the proposed DL networks can be trained by a small dataset created from approximately 30 experimental images, each with a size of 256 × 256 pixels(2). The accuracy and robustness of the network were verified by resolving the structural defects of graphene and polar structures in PbTiO(3)/SrTiO(3) multilayers from both the general TEM images and their imitated images on which intensities of some pixels lost randomly. Such a network has the potential to identify atoms from very few images of beam-sensitive material and explosive images recorded in a dynamical atomic process. The idea of using a small-dataset-trained DL framework to resolve a specific problem may prove instructive for practical DL applications in various fields. Nature Publishing Group UK 2023-02-14 /pmc/articles/PMC9929221/ /pubmed/36788257 http://dx.doi.org/10.1038/s41598-023-29606-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chen, Yuan Liu, Shangpeng Tong, Peiran Huang, Ying Tian, He Lin, Fang A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title | A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title_full | A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title_fullStr | A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title_full_unstemmed | A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title_short | A small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
title_sort | small-dataset-trained deep learning framework for identifying atoms on transmission electron microscopy images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929221/ https://www.ncbi.nlm.nih.gov/pubmed/36788257 http://dx.doi.org/10.1038/s41598-023-29606-9 |
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