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Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy

Lung adenocarcinoma (LUAD) is an essential pathological subtype of non-small cell lung cancer and offers a severe problem for worldwide public health. There is mounting proof that angiogenesis is a crucial player in LUAD progression. Consequently, the purpose of this research was to construct a nove...

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Autores principales: Wang, Jinsong, Cui, Xue, Weng, Yiming, Wei, Jiayan, Chen, Xinyi, Wang, Peiwei, Wang, Tong, Qin, Jian, Peng, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929558/
https://www.ncbi.nlm.nih.gov/pubmed/36816016
http://dx.doi.org/10.3389/fgene.2023.1092968
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author Wang, Jinsong
Cui, Xue
Weng, Yiming
Wei, Jiayan
Chen, Xinyi
Wang, Peiwei
Wang, Tong
Qin, Jian
Peng, Min
author_facet Wang, Jinsong
Cui, Xue
Weng, Yiming
Wei, Jiayan
Chen, Xinyi
Wang, Peiwei
Wang, Tong
Qin, Jian
Peng, Min
author_sort Wang, Jinsong
collection PubMed
description Lung adenocarcinoma (LUAD) is an essential pathological subtype of non-small cell lung cancer and offers a severe problem for worldwide public health. There is mounting proof that angiogenesis is a crucial player in LUAD progression. Consequently, the purpose of this research was to construct a novel LUAD risk assessment model based on genetic markers related to angiogenesis. We accessed The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases for LUAD mRNA sequencing data and clinical information. Based on machine algorithms and bioinformatics, angiogenic gene-related risk scores (RS) were calculated. Patients in the high-risk category had a worse prognosis (p < 0.001) in the discovery TCGA cohort, and the results were confirmed by these three cohorts (validation TCGA cohort, total TCGA cohort, and GSE68465 cohort). Moreover, risk scores for genes involved in angiogenesis were independent risk factors for lung cancer in all four cohorts. The low-risk group was associated with better immune status and lower tumor mutational load. In addition, the somatic mutation study revealed that the low-risk group had a lower mutation frequency than the high-risk group. According to an analysis of tumor stem cell infiltration, HLA expression, and TIDE scores, the low-risk group had higher TIDE scores and HLA expression levels than the high-risk group, and the amount of tumor stem cell infiltration correlated with the risk score. In addition, high-risk groups may benefit from immune checkpoint inhibitors and targeted therapies. In conclusion, we developed an angiogenesis-related gene risk model to predict the prognosis of LUAD patients, which may aid in the classification of patients with LUAD and select medications for LUAD patients.
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spelling pubmed-99295582023-02-16 Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy Wang, Jinsong Cui, Xue Weng, Yiming Wei, Jiayan Chen, Xinyi Wang, Peiwei Wang, Tong Qin, Jian Peng, Min Front Genet Genetics Lung adenocarcinoma (LUAD) is an essential pathological subtype of non-small cell lung cancer and offers a severe problem for worldwide public health. There is mounting proof that angiogenesis is a crucial player in LUAD progression. Consequently, the purpose of this research was to construct a novel LUAD risk assessment model based on genetic markers related to angiogenesis. We accessed The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases for LUAD mRNA sequencing data and clinical information. Based on machine algorithms and bioinformatics, angiogenic gene-related risk scores (RS) were calculated. Patients in the high-risk category had a worse prognosis (p < 0.001) in the discovery TCGA cohort, and the results were confirmed by these three cohorts (validation TCGA cohort, total TCGA cohort, and GSE68465 cohort). Moreover, risk scores for genes involved in angiogenesis were independent risk factors for lung cancer in all four cohorts. The low-risk group was associated with better immune status and lower tumor mutational load. In addition, the somatic mutation study revealed that the low-risk group had a lower mutation frequency than the high-risk group. According to an analysis of tumor stem cell infiltration, HLA expression, and TIDE scores, the low-risk group had higher TIDE scores and HLA expression levels than the high-risk group, and the amount of tumor stem cell infiltration correlated with the risk score. In addition, high-risk groups may benefit from immune checkpoint inhibitors and targeted therapies. In conclusion, we developed an angiogenesis-related gene risk model to predict the prognosis of LUAD patients, which may aid in the classification of patients with LUAD and select medications for LUAD patients. Frontiers Media S.A. 2023-02-01 /pmc/articles/PMC9929558/ /pubmed/36816016 http://dx.doi.org/10.3389/fgene.2023.1092968 Text en Copyright © 2023 Wang, Cui, Weng, Wei, Chen, Wang, Wang, Qin and Peng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Wang, Jinsong
Cui, Xue
Weng, Yiming
Wei, Jiayan
Chen, Xinyi
Wang, Peiwei
Wang, Tong
Qin, Jian
Peng, Min
Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title_full Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title_fullStr Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title_full_unstemmed Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title_short Application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
title_sort application of an angiogenesis-related genes risk model in lung adenocarcinoma prognosis and immunotherapy
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929558/
https://www.ncbi.nlm.nih.gov/pubmed/36816016
http://dx.doi.org/10.3389/fgene.2023.1092968
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