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Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics

BACKGROUND: The exact mechanism of glioblastoma multiforme (GBM) remains unclear. This study was to clarify the expression of P53 in glioma and its molecular mechanism, and to explore the possibility of P53 as a potential therapeutic target of glioma and its clinical application value, so as to prov...

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Autores principales: Li, Baiyu, Li, Hang, Zhang, Linghui, Ren, Taowen, Meng, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929792/
https://www.ncbi.nlm.nih.gov/pubmed/36819578
http://dx.doi.org/10.21037/atm-22-5646
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author Li, Baiyu
Li, Hang
Zhang, Linghui
Ren, Taowen
Meng, Jie
author_facet Li, Baiyu
Li, Hang
Zhang, Linghui
Ren, Taowen
Meng, Jie
author_sort Li, Baiyu
collection PubMed
description BACKGROUND: The exact mechanism of glioblastoma multiforme (GBM) remains unclear. This study was to clarify the expression of P53 in glioma and its molecular mechanism, and to explore the possibility of P53 as a potential therapeutic target of glioma and its clinical application value, so as to provide a new theoretical basis for the treatment of glioma. METHODS: Firstly, a dataset was established to analyze the expression of P53 in different stages of glioma and its relationship with prognosis by using The Cancer Genome Atlas (TCGA) database, RNA-seq data, and survival data of glioma and normal control samples in gene expression profiling and interactive analysis (GEPIA). The genes co-expressed with P53 were screened out, their differential expression between glioma and normal control group was analyzed, and their functions were analyzed by enrichment analysis. The TGGA database was used for data verification and analysis. The correlation between P53 expression and clinicopathological parameters was analyzed. Kaplan-Meier survival analysis was used to analyze the relationship between P53 expression and overall survival (OS) and progression-free survival (PFS) of glioma patients, and Cox regression analysis was used to analyze the independent factors affecting OS and PFS of glioma patients. RESULTS: The results of TCGA data analysis were as follows: The expression level of P53 was different from that of different stages of glioma, namely, the expression level of P53 between grade II and grade III, grade III and grade IV, and grade II and grade IV were significantly different (P<0.05). The results of P53 gene-related survival analysis showed that KNL1 high expression and low expression were significantly different in OS, and the high expression group was associated with poor prognosis (P<0.05). CONCLUSIONS: The P53 expression can be an effective biological indicator of poor prognosis of glioma.
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spelling pubmed-99297922023-02-16 Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics Li, Baiyu Li, Hang Zhang, Linghui Ren, Taowen Meng, Jie Ann Transl Med Original Article BACKGROUND: The exact mechanism of glioblastoma multiforme (GBM) remains unclear. This study was to clarify the expression of P53 in glioma and its molecular mechanism, and to explore the possibility of P53 as a potential therapeutic target of glioma and its clinical application value, so as to provide a new theoretical basis for the treatment of glioma. METHODS: Firstly, a dataset was established to analyze the expression of P53 in different stages of glioma and its relationship with prognosis by using The Cancer Genome Atlas (TCGA) database, RNA-seq data, and survival data of glioma and normal control samples in gene expression profiling and interactive analysis (GEPIA). The genes co-expressed with P53 were screened out, their differential expression between glioma and normal control group was analyzed, and their functions were analyzed by enrichment analysis. The TGGA database was used for data verification and analysis. The correlation between P53 expression and clinicopathological parameters was analyzed. Kaplan-Meier survival analysis was used to analyze the relationship between P53 expression and overall survival (OS) and progression-free survival (PFS) of glioma patients, and Cox regression analysis was used to analyze the independent factors affecting OS and PFS of glioma patients. RESULTS: The results of TCGA data analysis were as follows: The expression level of P53 was different from that of different stages of glioma, namely, the expression level of P53 between grade II and grade III, grade III and grade IV, and grade II and grade IV were significantly different (P<0.05). The results of P53 gene-related survival analysis showed that KNL1 high expression and low expression were significantly different in OS, and the high expression group was associated with poor prognosis (P<0.05). CONCLUSIONS: The P53 expression can be an effective biological indicator of poor prognosis of glioma. AME Publishing Company 2023-01-31 2023-01-31 /pmc/articles/PMC9929792/ /pubmed/36819578 http://dx.doi.org/10.21037/atm-22-5646 Text en 2023 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Li, Baiyu
Li, Hang
Zhang, Linghui
Ren, Taowen
Meng, Jie
Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title_full Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title_fullStr Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title_full_unstemmed Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title_short Expression analysis of human glioma susceptibility gene and P53 in human glioma and its clinical significance based on bioinformatics
title_sort expression analysis of human glioma susceptibility gene and p53 in human glioma and its clinical significance based on bioinformatics
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9929792/
https://www.ncbi.nlm.nih.gov/pubmed/36819578
http://dx.doi.org/10.21037/atm-22-5646
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