Cargando…

Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application

Insertion/deletion polymorphisms (InDels) have been treated as a prospective and helpful genetic marker in the fields of forensic human identification, anthropology and population genetics for the past few years. In this study, we developed a six-dye multiplex typing system consisting of 34 autosoma...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Qi, Yu, Huan, Qu, Yiling, Zhang, Xiaochun, Xia, Ruocheng, Wang, Ziwei, Tan, Rui, Xiong, Lei, Xi, Shihan, Wu, Jun, Gao, Yuzhen, Zhang, Suhua, Li, Chengtao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930762/
https://www.ncbi.nlm.nih.gov/pubmed/36817233
http://dx.doi.org/10.1080/20961790.2021.1945723
_version_ 1784889100661161984
author Yang, Qi
Yu, Huan
Qu, Yiling
Zhang, Xiaochun
Xia, Ruocheng
Wang, Ziwei
Tan, Rui
Xiong, Lei
Xi, Shihan
Wu, Jun
Gao, Yuzhen
Zhang, Suhua
Li, Chengtao
author_facet Yang, Qi
Yu, Huan
Qu, Yiling
Zhang, Xiaochun
Xia, Ruocheng
Wang, Ziwei
Tan, Rui
Xiong, Lei
Xi, Shihan
Wu, Jun
Gao, Yuzhen
Zhang, Suhua
Li, Chengtao
author_sort Yang, Qi
collection PubMed
description Insertion/deletion polymorphisms (InDels) have been treated as a prospective and helpful genetic marker in the fields of forensic human identification, anthropology and population genetics for the past few years. In this study, we developed a six-dye multiplex typing system consisting of 34 autosomal InDels and Amelogenin for forensic application. The contained InDels were specifically selected for Chinese population with the MAF ≥ 0.25 in East Asia, which do not overlap with the markers of Investigator(®) DIPplex kit. The typing system was named as Goldeneye(TM) DNA ID System 35InDel Kit, and a series of developmental validation studies including repeatability/reproducibility, concordance, accuracy, sensitivity, stability, species specificity and population genetics were conducted on this kit. We confirmed that the 35InDel kit is precise, sensitive, species specific and robust for forensic practice. Moreover, the 35InDel kit is capable of typing DNA extracted from forensic routine case-type samples as well as degraded samples and mixture samples. All markers are proved to be highly polymorphic with an average observed heterozygosity (He) of 0.4582. The combined power of discrimination (CPD) is 0.999 999 999 999 978 and the combined power of exclusion in duos (CPE(D)) and trios (CPE(T)) are 0.978 837 and 0.999573, respectively, which are higher than those of the Investigator(®) DIPplex kit. Thus, the Goldeneye(TM) DNA ID System 35InDel kit is suitable for forensic human identification and could serve as a supplementary typing system for paternity testing. Supplemental data for this article is available online at https://doi.org/10.1080/20961790.2021.1945723 .
format Online
Article
Text
id pubmed-9930762
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-99307622023-02-16 Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application Yang, Qi Yu, Huan Qu, Yiling Zhang, Xiaochun Xia, Ruocheng Wang, Ziwei Tan, Rui Xiong, Lei Xi, Shihan Wu, Jun Gao, Yuzhen Zhang, Suhua Li, Chengtao Forensic Sci Res Research Articles Insertion/deletion polymorphisms (InDels) have been treated as a prospective and helpful genetic marker in the fields of forensic human identification, anthropology and population genetics for the past few years. In this study, we developed a six-dye multiplex typing system consisting of 34 autosomal InDels and Amelogenin for forensic application. The contained InDels were specifically selected for Chinese population with the MAF ≥ 0.25 in East Asia, which do not overlap with the markers of Investigator(®) DIPplex kit. The typing system was named as Goldeneye(TM) DNA ID System 35InDel Kit, and a series of developmental validation studies including repeatability/reproducibility, concordance, accuracy, sensitivity, stability, species specificity and population genetics were conducted on this kit. We confirmed that the 35InDel kit is precise, sensitive, species specific and robust for forensic practice. Moreover, the 35InDel kit is capable of typing DNA extracted from forensic routine case-type samples as well as degraded samples and mixture samples. All markers are proved to be highly polymorphic with an average observed heterozygosity (He) of 0.4582. The combined power of discrimination (CPD) is 0.999 999 999 999 978 and the combined power of exclusion in duos (CPE(D)) and trios (CPE(T)) are 0.978 837 and 0.999573, respectively, which are higher than those of the Investigator(®) DIPplex kit. Thus, the Goldeneye(TM) DNA ID System 35InDel kit is suitable for forensic human identification and could serve as a supplementary typing system for paternity testing. Supplemental data for this article is available online at https://doi.org/10.1080/20961790.2021.1945723 . Taylor & Francis 2021-08-28 /pmc/articles/PMC9930762/ /pubmed/36817233 http://dx.doi.org/10.1080/20961790.2021.1945723 Text en © 2021 The Author(s). Published by Taylor & Francis Group on behalf of the Academy of Forensic Science. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Yang, Qi
Yu, Huan
Qu, Yiling
Zhang, Xiaochun
Xia, Ruocheng
Wang, Ziwei
Tan, Rui
Xiong, Lei
Xi, Shihan
Wu, Jun
Gao, Yuzhen
Zhang, Suhua
Li, Chengtao
Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title_full Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title_fullStr Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title_full_unstemmed Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title_short Developmental validation of the novel six-dye Goldeneye(TM) DNA ID System 35InDel kit for forensic application
title_sort developmental validation of the novel six-dye goldeneye(tm) dna id system 35indel kit for forensic application
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930762/
https://www.ncbi.nlm.nih.gov/pubmed/36817233
http://dx.doi.org/10.1080/20961790.2021.1945723
work_keys_str_mv AT yangqi developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT yuhuan developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT quyiling developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT zhangxiaochun developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT xiaruocheng developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT wangziwei developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT tanrui developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT xionglei developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT xishihan developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT wujun developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT gaoyuzhen developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT zhangsuhua developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication
AT lichengtao developmentalvalidationofthenovelsixdyegoldeneyetmdnaidsystem35indelkitforforensicapplication