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The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae)
Castanopsis fordii Hance 1884 is a typical evergreen broad-leaved forest plant in the south subtropical and middle subtropical regions of China. It has high utilization value in wood production and soil erosion protection. Here, we first reported and characterized the complete chloroplast (cp) genom...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930788/ https://www.ncbi.nlm.nih.gov/pubmed/36816059 http://dx.doi.org/10.1080/23802359.2023.2167477 |
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author | Wang, Ya-Feng Huang, Yong-Lin He, Rui-Jie Yang, Bing-Yuan Liu, Zhang-Bin |
author_facet | Wang, Ya-Feng Huang, Yong-Lin He, Rui-Jie Yang, Bing-Yuan Liu, Zhang-Bin |
author_sort | Wang, Ya-Feng |
collection | PubMed |
description | Castanopsis fordii Hance 1884 is a typical evergreen broad-leaved forest plant in the south subtropical and middle subtropical regions of China. It has high utilization value in wood production and soil erosion protection. Here, we first reported and characterized the complete chloroplast (cp) genome sequence of C. fordii based on Illumina paired-end sequencing data. The complete cp genome sequence of C. fordii was 160,853 base pairs (bp) in length which contained two inverted repeats (IRs) of 25,699 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 90,474 bp and 18,981 bp, respectively. The cpDNA contained 129 genes, comprising 85 protein-coding genes, 36 tRNA genes, 8 rRNA genes. The overall GC content of the plastome was 36.8%. Phylogenetic analysis base on 14 chloroplast genomes indicated that C. fordii was closely related to the species C. tibetana and C. concinna in Fagaceae. |
format | Online Article Text |
id | pubmed-9930788 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-99307882023-02-16 The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) Wang, Ya-Feng Huang, Yong-Lin He, Rui-Jie Yang, Bing-Yuan Liu, Zhang-Bin Mitochondrial DNA B Resour Plastome Announcement Castanopsis fordii Hance 1884 is a typical evergreen broad-leaved forest plant in the south subtropical and middle subtropical regions of China. It has high utilization value in wood production and soil erosion protection. Here, we first reported and characterized the complete chloroplast (cp) genome sequence of C. fordii based on Illumina paired-end sequencing data. The complete cp genome sequence of C. fordii was 160,853 base pairs (bp) in length which contained two inverted repeats (IRs) of 25,699 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 90,474 bp and 18,981 bp, respectively. The cpDNA contained 129 genes, comprising 85 protein-coding genes, 36 tRNA genes, 8 rRNA genes. The overall GC content of the plastome was 36.8%. Phylogenetic analysis base on 14 chloroplast genomes indicated that C. fordii was closely related to the species C. tibetana and C. concinna in Fagaceae. Taylor & Francis 2023-02-10 /pmc/articles/PMC9930788/ /pubmed/36816059 http://dx.doi.org/10.1080/23802359.2023.2167477 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Wang, Ya-Feng Huang, Yong-Lin He, Rui-Jie Yang, Bing-Yuan Liu, Zhang-Bin The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title | The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title_full | The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title_fullStr | The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title_short | The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae) |
title_sort | complete chloroplast genome sequence of castanopsis fordii hance (fagaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930788/ https://www.ncbi.nlm.nih.gov/pubmed/36816059 http://dx.doi.org/10.1080/23802359.2023.2167477 |
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