The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines

Senna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science,...

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Autores principales: Quiñones, Kristine J. O., Gentallan, Renerio P., Bartolome, Michael C. B., Madayag, Roselle E., Vera Cruz, Juan R. A., Cirunay, Angeleigh R. T., Endonela, Leah E., Timog, Emmanuel B. S., Borromeo, Teresita H., Altoveros, Nestor C., Alvaran, Bartimeus B. S., Magtoltol, Jessabel B., Cejalvo, Reneliza D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930843/
https://www.ncbi.nlm.nih.gov/pubmed/36816058
http://dx.doi.org/10.1080/23802359.2023.2172973
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author Quiñones, Kristine J. O.
Gentallan, Renerio P.
Bartolome, Michael C. B.
Madayag, Roselle E.
Vera Cruz, Juan R. A.
Cirunay, Angeleigh R. T.
Endonela, Leah E.
Timog, Emmanuel B. S.
Borromeo, Teresita H.
Altoveros, Nestor C.
Alvaran, Bartimeus B. S.
Magtoltol, Jessabel B.
Cejalvo, Reneliza D.
author_facet Quiñones, Kristine J. O.
Gentallan, Renerio P.
Bartolome, Michael C. B.
Madayag, Roselle E.
Vera Cruz, Juan R. A.
Cirunay, Angeleigh R. T.
Endonela, Leah E.
Timog, Emmanuel B. S.
Borromeo, Teresita H.
Altoveros, Nestor C.
Alvaran, Bartimeus B. S.
Magtoltol, Jessabel B.
Cejalvo, Reneliza D.
author_sort Quiñones, Kristine J. O.
collection PubMed
description Senna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science, University of the Philippines, Los Baños, using Illumina sequencing data. The complete cp genome was 159,176-bp long characterized by a large single copy of 88,769 bp, short single-copy of 18,301 bp and a pair of inverted repeat regions of 26,053 bp each. The overall GC content of the chloroplast genome was 36.4%. The plastome comprised 37 tRNA genes, 8 rRNA genes and 78 mRNA genes. Phylogenetic analysis showed that S. alata is closely related to S. siamea.
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spelling pubmed-99308432023-02-16 The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines Quiñones, Kristine J. O. Gentallan, Renerio P. Bartolome, Michael C. B. Madayag, Roselle E. Vera Cruz, Juan R. A. Cirunay, Angeleigh R. T. Endonela, Leah E. Timog, Emmanuel B. S. Borromeo, Teresita H. Altoveros, Nestor C. Alvaran, Bartimeus B. S. Magtoltol, Jessabel B. Cejalvo, Reneliza D. Mitochondrial DNA B Resour Plastome Announcement Senna alata, a flowering shrub, is widely cultivated in the Philippines for its anti-fungal properties. Despite this, its chloroplast genome is not yet established. We assembled and annotated the complete chloroplast genome of accession from the germplasm collection of the Institute of Crop Science, University of the Philippines, Los Baños, using Illumina sequencing data. The complete cp genome was 159,176-bp long characterized by a large single copy of 88,769 bp, short single-copy of 18,301 bp and a pair of inverted repeat regions of 26,053 bp each. The overall GC content of the chloroplast genome was 36.4%. The plastome comprised 37 tRNA genes, 8 rRNA genes and 78 mRNA genes. Phylogenetic analysis showed that S. alata is closely related to S. siamea. Taylor & Francis 2023-02-10 /pmc/articles/PMC9930843/ /pubmed/36816058 http://dx.doi.org/10.1080/23802359.2023.2172973 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Quiñones, Kristine J. O.
Gentallan, Renerio P.
Bartolome, Michael C. B.
Madayag, Roselle E.
Vera Cruz, Juan R. A.
Cirunay, Angeleigh R. T.
Endonela, Leah E.
Timog, Emmanuel B. S.
Borromeo, Teresita H.
Altoveros, Nestor C.
Alvaran, Bartimeus B. S.
Magtoltol, Jessabel B.
Cejalvo, Reneliza D.
The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title_full The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title_fullStr The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title_full_unstemmed The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title_short The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines
title_sort complete chloroplast genome of senna alata (l.) roxb., an important medicinal plant from the philippines
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9930843/
https://www.ncbi.nlm.nih.gov/pubmed/36816058
http://dx.doi.org/10.1080/23802359.2023.2172973
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