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COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients

BACKGROUND: COVID-19 remains a complex disease in terms of its trajectory and the diversity of outcomes rendering disease management and clinical resource allocation challenging. Varying symptomatology in older patients as well as limitation of clinical scoring systems have created the need for more...

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Autores principales: Mamandipoor, Behrooz, Bruno, Raphael Romano, Wernly, Bernhard, Wolff, Georg, Fjølner, Jesper, Artigas, Antonio, Pinto, Bernardo Bollen, Schefold, Joerg C., Kelm, Malte, Beil, Michael, Sigal, Sviri, Leaver, Susannah, De Lange, Dylan W., Guidet, Bertrand, Flaatten, Hans, Szczeklik, Wojciech, Jung, Christian, Osmani, Venet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931233/
https://www.ncbi.nlm.nih.gov/pubmed/36812571
http://dx.doi.org/10.1371/journal.pdig.0000136
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author Mamandipoor, Behrooz
Bruno, Raphael Romano
Wernly, Bernhard
Wolff, Georg
Fjølner, Jesper
Artigas, Antonio
Pinto, Bernardo Bollen
Schefold, Joerg C.
Kelm, Malte
Beil, Michael
Sigal, Sviri
Leaver, Susannah
De Lange, Dylan W.
Guidet, Bertrand
Flaatten, Hans
Szczeklik, Wojciech
Jung, Christian
Osmani, Venet
author_facet Mamandipoor, Behrooz
Bruno, Raphael Romano
Wernly, Bernhard
Wolff, Georg
Fjølner, Jesper
Artigas, Antonio
Pinto, Bernardo Bollen
Schefold, Joerg C.
Kelm, Malte
Beil, Michael
Sigal, Sviri
Leaver, Susannah
De Lange, Dylan W.
Guidet, Bertrand
Flaatten, Hans
Szczeklik, Wojciech
Jung, Christian
Osmani, Venet
author_sort Mamandipoor, Behrooz
collection PubMed
description BACKGROUND: COVID-19 remains a complex disease in terms of its trajectory and the diversity of outcomes rendering disease management and clinical resource allocation challenging. Varying symptomatology in older patients as well as limitation of clinical scoring systems have created the need for more objective and consistent methods to aid clinical decision making. In this regard, machine learning methods have been shown to enhance prognostication, while improving consistency. However, current machine learning approaches have been limited by lack of generalisation to diverse patient populations, between patients admitted at different waves and small sample sizes. OBJECTIVES: We sought to investigate whether machine learning models, derived on routinely collected clinical data, can generalise well i) between European countries, ii) between European patients admitted at different COVID-19 waves, and iii) between geographically diverse patients, namely whether a model derived on the European patient cohort can be used to predict outcomes of patients admitted to Asian, African and American ICUs. METHODS: We compare Logistic Regression, Feed Forward Neural Network and XGBoost algorithms to analyse data from 3,933 older patients with a confirmed COVID-19 diagnosis in predicting three outcomes, namely: ICU mortality, 30-day mortality and patients at low risk of deterioration. The patients were admitted to ICUs located in 37 countries, between January 11, 2020, and April 27, 2021. RESULTS: The XGBoost model derived on the European cohort and externally validated in cohorts of Asian, African, and American patients, achieved AUC of 0.89 (95% CI 0.89–0.89) in predicting ICU mortality, AUC of 0.86 (95% CI 0.86–0.86) for 30-day mortality prediction and AUC of 0.86 (95% CI 0.86–0.86) in predicting low-risk patients. Similar AUC performance was achieved also when predicting outcomes between European countries and between pandemic waves, while the models showed high calibration quality. Furthermore, saliency analysis showed that FiO2 values of up to 40% do not appear to increase the predicted risk of ICU and 30-day mortality, while PaO2 values of 75 mmHg or lower are associated with a sharp increase in the predicted risk of ICU and 30-day mortality. Lastly, increase in SOFA scores also increase the predicted risk, but only up to a value of 8. Beyond these scores the predicted risk remains consistently high. CONCLUSION: The models captured both the dynamic course of the disease as well as similarities and differences between the diverse patient cohorts, enabling prediction of disease severity, identification of low-risk patients and potentially supporting effective planning of essential clinical resources. TRIAL REGISTRATION NUMBER: NCT04321265.
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spelling pubmed-99312332023-02-16 COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients Mamandipoor, Behrooz Bruno, Raphael Romano Wernly, Bernhard Wolff, Georg Fjølner, Jesper Artigas, Antonio Pinto, Bernardo Bollen Schefold, Joerg C. Kelm, Malte Beil, Michael Sigal, Sviri Leaver, Susannah De Lange, Dylan W. Guidet, Bertrand Flaatten, Hans Szczeklik, Wojciech Jung, Christian Osmani, Venet PLOS Digit Health Research Article BACKGROUND: COVID-19 remains a complex disease in terms of its trajectory and the diversity of outcomes rendering disease management and clinical resource allocation challenging. Varying symptomatology in older patients as well as limitation of clinical scoring systems have created the need for more objective and consistent methods to aid clinical decision making. In this regard, machine learning methods have been shown to enhance prognostication, while improving consistency. However, current machine learning approaches have been limited by lack of generalisation to diverse patient populations, between patients admitted at different waves and small sample sizes. OBJECTIVES: We sought to investigate whether machine learning models, derived on routinely collected clinical data, can generalise well i) between European countries, ii) between European patients admitted at different COVID-19 waves, and iii) between geographically diverse patients, namely whether a model derived on the European patient cohort can be used to predict outcomes of patients admitted to Asian, African and American ICUs. METHODS: We compare Logistic Regression, Feed Forward Neural Network and XGBoost algorithms to analyse data from 3,933 older patients with a confirmed COVID-19 diagnosis in predicting three outcomes, namely: ICU mortality, 30-day mortality and patients at low risk of deterioration. The patients were admitted to ICUs located in 37 countries, between January 11, 2020, and April 27, 2021. RESULTS: The XGBoost model derived on the European cohort and externally validated in cohorts of Asian, African, and American patients, achieved AUC of 0.89 (95% CI 0.89–0.89) in predicting ICU mortality, AUC of 0.86 (95% CI 0.86–0.86) for 30-day mortality prediction and AUC of 0.86 (95% CI 0.86–0.86) in predicting low-risk patients. Similar AUC performance was achieved also when predicting outcomes between European countries and between pandemic waves, while the models showed high calibration quality. Furthermore, saliency analysis showed that FiO2 values of up to 40% do not appear to increase the predicted risk of ICU and 30-day mortality, while PaO2 values of 75 mmHg or lower are associated with a sharp increase in the predicted risk of ICU and 30-day mortality. Lastly, increase in SOFA scores also increase the predicted risk, but only up to a value of 8. Beyond these scores the predicted risk remains consistently high. CONCLUSION: The models captured both the dynamic course of the disease as well as similarities and differences between the diverse patient cohorts, enabling prediction of disease severity, identification of low-risk patients and potentially supporting effective planning of essential clinical resources. TRIAL REGISTRATION NUMBER: NCT04321265. Public Library of Science 2022-11-08 /pmc/articles/PMC9931233/ /pubmed/36812571 http://dx.doi.org/10.1371/journal.pdig.0000136 Text en © 2022 Mamandipoor et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Mamandipoor, Behrooz
Bruno, Raphael Romano
Wernly, Bernhard
Wolff, Georg
Fjølner, Jesper
Artigas, Antonio
Pinto, Bernardo Bollen
Schefold, Joerg C.
Kelm, Malte
Beil, Michael
Sigal, Sviri
Leaver, Susannah
De Lange, Dylan W.
Guidet, Bertrand
Flaatten, Hans
Szczeklik, Wojciech
Jung, Christian
Osmani, Venet
COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title_full COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title_fullStr COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title_full_unstemmed COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title_short COVID-19 machine learning model predicts outcomes in older patients from various European countries, between pandemic waves, and in a cohort of Asian, African, and American patients
title_sort covid-19 machine learning model predicts outcomes in older patients from various european countries, between pandemic waves, and in a cohort of asian, african, and american patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931233/
https://www.ncbi.nlm.nih.gov/pubmed/36812571
http://dx.doi.org/10.1371/journal.pdig.0000136
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