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Bayesian estimation reveals that reproducible models in Systems Biology get more citations

The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of...

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Autores principales: Höpfl, Sebastian, Pleiss, Jürgen, Radde, Nicole E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931699/
https://www.ncbi.nlm.nih.gov/pubmed/36792648
http://dx.doi.org/10.1038/s41598-023-29340-2
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author Höpfl, Sebastian
Pleiss, Jürgen
Radde, Nicole E.
author_facet Höpfl, Sebastian
Pleiss, Jürgen
Radde, Nicole E.
author_sort Höpfl, Sebastian
collection PubMed
description The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of whether reproducible models have a higher impact in terms of citations. Therefore, we statistically analyze 328 published models recently classified by Tiwari et al. based on their reproducibility. For hypothesis testing, we use a flexible Bayesian approach that provides complete distributional information for all quantities of interest and can handle outliers. The results show that in the period from 2013, i.e., 10 years after the introduction of SBML, to 2020, the group of reproducible models is significantly more cited than the non-reproducible group. We show that differences in journal impact factors do not explain this effect and that this effect increases with additional standardization of data and error model integration via PEtab. Overall, our statistical analysis demonstrates the long-term merits of reproducible modeling for the individual researcher in terms of citations. Moreover, it provides evidence for the increased use of reproducible models in the scientific community.
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spelling pubmed-99316992023-02-17 Bayesian estimation reveals that reproducible models in Systems Biology get more citations Höpfl, Sebastian Pleiss, Jürgen Radde, Nicole E. Sci Rep Article The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of whether reproducible models have a higher impact in terms of citations. Therefore, we statistically analyze 328 published models recently classified by Tiwari et al. based on their reproducibility. For hypothesis testing, we use a flexible Bayesian approach that provides complete distributional information for all quantities of interest and can handle outliers. The results show that in the period from 2013, i.e., 10 years after the introduction of SBML, to 2020, the group of reproducible models is significantly more cited than the non-reproducible group. We show that differences in journal impact factors do not explain this effect and that this effect increases with additional standardization of data and error model integration via PEtab. Overall, our statistical analysis demonstrates the long-term merits of reproducible modeling for the individual researcher in terms of citations. Moreover, it provides evidence for the increased use of reproducible models in the scientific community. Nature Publishing Group UK 2023-02-15 /pmc/articles/PMC9931699/ /pubmed/36792648 http://dx.doi.org/10.1038/s41598-023-29340-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Höpfl, Sebastian
Pleiss, Jürgen
Radde, Nicole E.
Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title_full Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title_fullStr Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title_full_unstemmed Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title_short Bayesian estimation reveals that reproducible models in Systems Biology get more citations
title_sort bayesian estimation reveals that reproducible models in systems biology get more citations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931699/
https://www.ncbi.nlm.nih.gov/pubmed/36792648
http://dx.doi.org/10.1038/s41598-023-29340-2
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