Cargando…
Bayesian estimation reveals that reproducible models in Systems Biology get more citations
The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931699/ https://www.ncbi.nlm.nih.gov/pubmed/36792648 http://dx.doi.org/10.1038/s41598-023-29340-2 |
_version_ | 1784889288592195584 |
---|---|
author | Höpfl, Sebastian Pleiss, Jürgen Radde, Nicole E. |
author_facet | Höpfl, Sebastian Pleiss, Jürgen Radde, Nicole E. |
author_sort | Höpfl, Sebastian |
collection | PubMed |
description | The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of whether reproducible models have a higher impact in terms of citations. Therefore, we statistically analyze 328 published models recently classified by Tiwari et al. based on their reproducibility. For hypothesis testing, we use a flexible Bayesian approach that provides complete distributional information for all quantities of interest and can handle outliers. The results show that in the period from 2013, i.e., 10 years after the introduction of SBML, to 2020, the group of reproducible models is significantly more cited than the non-reproducible group. We show that differences in journal impact factors do not explain this effect and that this effect increases with additional standardization of data and error model integration via PEtab. Overall, our statistical analysis demonstrates the long-term merits of reproducible modeling for the individual researcher in terms of citations. Moreover, it provides evidence for the increased use of reproducible models in the scientific community. |
format | Online Article Text |
id | pubmed-9931699 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99316992023-02-17 Bayesian estimation reveals that reproducible models in Systems Biology get more citations Höpfl, Sebastian Pleiss, Jürgen Radde, Nicole E. Sci Rep Article The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of whether reproducible models have a higher impact in terms of citations. Therefore, we statistically analyze 328 published models recently classified by Tiwari et al. based on their reproducibility. For hypothesis testing, we use a flexible Bayesian approach that provides complete distributional information for all quantities of interest and can handle outliers. The results show that in the period from 2013, i.e., 10 years after the introduction of SBML, to 2020, the group of reproducible models is significantly more cited than the non-reproducible group. We show that differences in journal impact factors do not explain this effect and that this effect increases with additional standardization of data and error model integration via PEtab. Overall, our statistical analysis demonstrates the long-term merits of reproducible modeling for the individual researcher in terms of citations. Moreover, it provides evidence for the increased use of reproducible models in the scientific community. Nature Publishing Group UK 2023-02-15 /pmc/articles/PMC9931699/ /pubmed/36792648 http://dx.doi.org/10.1038/s41598-023-29340-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Höpfl, Sebastian Pleiss, Jürgen Radde, Nicole E. Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title | Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title_full | Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title_fullStr | Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title_full_unstemmed | Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title_short | Bayesian estimation reveals that reproducible models in Systems Biology get more citations |
title_sort | bayesian estimation reveals that reproducible models in systems biology get more citations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931699/ https://www.ncbi.nlm.nih.gov/pubmed/36792648 http://dx.doi.org/10.1038/s41598-023-29340-2 |
work_keys_str_mv | AT hopflsebastian bayesianestimationrevealsthatreproduciblemodelsinsystemsbiologygetmorecitations AT pleissjurgen bayesianestimationrevealsthatreproduciblemodelsinsystemsbiologygetmorecitations AT raddenicolee bayesianestimationrevealsthatreproduciblemodelsinsystemsbiologygetmorecitations |