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Accessibility percolation on Cartesian power graphs
A fitness landscape is a mapping from a space of discrete genotypes to the real numbers. A path in a fitness landscape is a sequence of genotypes connected by single mutational steps. Such a path is said to be accessible if the fitness values of the genotypes encountered along the path increase mono...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931871/ https://www.ncbi.nlm.nih.gov/pubmed/36790641 http://dx.doi.org/10.1007/s00285-023-01882-z |
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author | Schmiegelt, Benjamin Krug, Joachim |
author_facet | Schmiegelt, Benjamin Krug, Joachim |
author_sort | Schmiegelt, Benjamin |
collection | PubMed |
description | A fitness landscape is a mapping from a space of discrete genotypes to the real numbers. A path in a fitness landscape is a sequence of genotypes connected by single mutational steps. Such a path is said to be accessible if the fitness values of the genotypes encountered along the path increase monotonically. We study accessible paths on random fitness landscapes of the House-of-Cards type, on which fitness values are independent, identically and continuously distributed random variables. The genotype space is taken to be a Cartesian power graph [Formula: see text] , where [Formula: see text] is the number of genetic loci and the allele graph [Formula: see text] encodes the possible allelic states and mutational transitions on one locus. The probability of existence of accessible paths between two genotypes at a distance linear in [Formula: see text] displays a transition from 0 to a positive value at a threshold [Formula: see text] for the fitness difference between the initial and final genotype. We derive a lower bound on [Formula: see text] for general [Formula: see text] and show that this bound is tight for a large class of allele graphs. Our results generalize previous results for accessibility percolation on the biallelic hypercube, and compare favorably to published numerical results for multiallelic Hamming graphs. |
format | Online Article Text |
id | pubmed-9931871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-99318712023-02-17 Accessibility percolation on Cartesian power graphs Schmiegelt, Benjamin Krug, Joachim J Math Biol Article A fitness landscape is a mapping from a space of discrete genotypes to the real numbers. A path in a fitness landscape is a sequence of genotypes connected by single mutational steps. Such a path is said to be accessible if the fitness values of the genotypes encountered along the path increase monotonically. We study accessible paths on random fitness landscapes of the House-of-Cards type, on which fitness values are independent, identically and continuously distributed random variables. The genotype space is taken to be a Cartesian power graph [Formula: see text] , where [Formula: see text] is the number of genetic loci and the allele graph [Formula: see text] encodes the possible allelic states and mutational transitions on one locus. The probability of existence of accessible paths between two genotypes at a distance linear in [Formula: see text] displays a transition from 0 to a positive value at a threshold [Formula: see text] for the fitness difference between the initial and final genotype. We derive a lower bound on [Formula: see text] for general [Formula: see text] and show that this bound is tight for a large class of allele graphs. Our results generalize previous results for accessibility percolation on the biallelic hypercube, and compare favorably to published numerical results for multiallelic Hamming graphs. Springer Berlin Heidelberg 2023-02-15 2023 /pmc/articles/PMC9931871/ /pubmed/36790641 http://dx.doi.org/10.1007/s00285-023-01882-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Schmiegelt, Benjamin Krug, Joachim Accessibility percolation on Cartesian power graphs |
title | Accessibility percolation on Cartesian power graphs |
title_full | Accessibility percolation on Cartesian power graphs |
title_fullStr | Accessibility percolation on Cartesian power graphs |
title_full_unstemmed | Accessibility percolation on Cartesian power graphs |
title_short | Accessibility percolation on Cartesian power graphs |
title_sort | accessibility percolation on cartesian power graphs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9931871/ https://www.ncbi.nlm.nih.gov/pubmed/36790641 http://dx.doi.org/10.1007/s00285-023-01882-z |
work_keys_str_mv | AT schmiegeltbenjamin accessibilitypercolationoncartesianpowergraphs AT krugjoachim accessibilitypercolationoncartesianpowergraphs |