Cargando…
Analyzing breast cancer invasive disease event classification through explainable artificial intelligence
INTRODUCTION: Recently, accurate machine learning and deep learning approaches have been dedicated to the investigation of breast cancer invasive disease events (IDEs), such as recurrence, contralateral and second cancers. However, such approaches are poorly interpretable. METHODS: Thus, we designed...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932275/ https://www.ncbi.nlm.nih.gov/pubmed/36817766 http://dx.doi.org/10.3389/fmed.2023.1116354 |
_version_ | 1784889418825334784 |
---|---|
author | Massafra, Raffaella Fanizzi, Annarita Amoroso, Nicola Bove, Samantha Comes, Maria Colomba Pomarico, Domenico Didonna, Vittorio Diotaiuti, Sergio Galati, Luisa Giotta, Francesco La Forgia, Daniele Latorre, Agnese Lombardi, Angela Nardone, Annalisa Pastena, Maria Irene Ressa, Cosmo Maurizio Rinaldi, Lucia Tamborra, Pasquale Zito, Alfredo Paradiso, Angelo Virgilio Bellotti, Roberto Lorusso, Vito |
author_facet | Massafra, Raffaella Fanizzi, Annarita Amoroso, Nicola Bove, Samantha Comes, Maria Colomba Pomarico, Domenico Didonna, Vittorio Diotaiuti, Sergio Galati, Luisa Giotta, Francesco La Forgia, Daniele Latorre, Agnese Lombardi, Angela Nardone, Annalisa Pastena, Maria Irene Ressa, Cosmo Maurizio Rinaldi, Lucia Tamborra, Pasquale Zito, Alfredo Paradiso, Angelo Virgilio Bellotti, Roberto Lorusso, Vito |
author_sort | Massafra, Raffaella |
collection | PubMed |
description | INTRODUCTION: Recently, accurate machine learning and deep learning approaches have been dedicated to the investigation of breast cancer invasive disease events (IDEs), such as recurrence, contralateral and second cancers. However, such approaches are poorly interpretable. METHODS: Thus, we designed an Explainable Artificial Intelligence (XAI) framework to investigate IDEs within a cohort of 486 breast cancer patients enrolled at IRCCS Istituto Tumori “Giovanni Paolo II” in Bari, Italy. Using Shapley values, we determined the IDE driving features according to two periods, often adopted in clinical practice, of 5 and 10 years from the first tumor diagnosis. RESULTS: Age, tumor diameter, surgery type, and multiplicity are predominant within the 5-year frame, while therapy-related features, including hormone, chemotherapy schemes and lymphovascular invasion, dominate the 10-year IDE prediction. Estrogen Receptor (ER), proliferation marker Ki67 and metastatic lymph nodes affect both frames. DISCUSSION: Thus, our framework aims at shortening the distance between AI and clinical practice |
format | Online Article Text |
id | pubmed-9932275 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99322752023-02-17 Analyzing breast cancer invasive disease event classification through explainable artificial intelligence Massafra, Raffaella Fanizzi, Annarita Amoroso, Nicola Bove, Samantha Comes, Maria Colomba Pomarico, Domenico Didonna, Vittorio Diotaiuti, Sergio Galati, Luisa Giotta, Francesco La Forgia, Daniele Latorre, Agnese Lombardi, Angela Nardone, Annalisa Pastena, Maria Irene Ressa, Cosmo Maurizio Rinaldi, Lucia Tamborra, Pasquale Zito, Alfredo Paradiso, Angelo Virgilio Bellotti, Roberto Lorusso, Vito Front Med (Lausanne) Medicine INTRODUCTION: Recently, accurate machine learning and deep learning approaches have been dedicated to the investigation of breast cancer invasive disease events (IDEs), such as recurrence, contralateral and second cancers. However, such approaches are poorly interpretable. METHODS: Thus, we designed an Explainable Artificial Intelligence (XAI) framework to investigate IDEs within a cohort of 486 breast cancer patients enrolled at IRCCS Istituto Tumori “Giovanni Paolo II” in Bari, Italy. Using Shapley values, we determined the IDE driving features according to two periods, often adopted in clinical practice, of 5 and 10 years from the first tumor diagnosis. RESULTS: Age, tumor diameter, surgery type, and multiplicity are predominant within the 5-year frame, while therapy-related features, including hormone, chemotherapy schemes and lymphovascular invasion, dominate the 10-year IDE prediction. Estrogen Receptor (ER), proliferation marker Ki67 and metastatic lymph nodes affect both frames. DISCUSSION: Thus, our framework aims at shortening the distance between AI and clinical practice Frontiers Media S.A. 2023-02-02 /pmc/articles/PMC9932275/ /pubmed/36817766 http://dx.doi.org/10.3389/fmed.2023.1116354 Text en Copyright © 2023 Massafra, Fanizzi, Amoroso, Bove, Comes, Pomarico, Didonna, Diotaiuti, Galati, Giotta, La Forgia, Latorre, Lombardi, Nardone, Pastena, Ressa, Rinaldi, Tamborra, Zito, Paradiso, Bellotti and Lorusso. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Massafra, Raffaella Fanizzi, Annarita Amoroso, Nicola Bove, Samantha Comes, Maria Colomba Pomarico, Domenico Didonna, Vittorio Diotaiuti, Sergio Galati, Luisa Giotta, Francesco La Forgia, Daniele Latorre, Agnese Lombardi, Angela Nardone, Annalisa Pastena, Maria Irene Ressa, Cosmo Maurizio Rinaldi, Lucia Tamborra, Pasquale Zito, Alfredo Paradiso, Angelo Virgilio Bellotti, Roberto Lorusso, Vito Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title | Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title_full | Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title_fullStr | Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title_full_unstemmed | Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title_short | Analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
title_sort | analyzing breast cancer invasive disease event classification through explainable artificial intelligence |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932275/ https://www.ncbi.nlm.nih.gov/pubmed/36817766 http://dx.doi.org/10.3389/fmed.2023.1116354 |
work_keys_str_mv | AT massafraraffaella analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT fanizziannarita analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT amorosonicola analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT bovesamantha analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT comesmariacolomba analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT pomaricodomenico analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT didonnavittorio analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT diotaiutisergio analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT galatiluisa analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT giottafrancesco analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT laforgiadaniele analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT latorreagnese analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT lombardiangela analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT nardoneannalisa analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT pastenamariairene analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT ressacosmomaurizio analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT rinaldilucia analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT tamborrapasquale analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT zitoalfredo analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT paradisoangelovirgilio analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT bellottiroberto analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence AT lorussovito analyzingbreastcancerinvasivediseaseeventclassificationthroughexplainableartificialintelligence |