Cargando…

DNA storage—from natural biology to synthetic biology

Natural DNA storage allows cellular differentiation, evolution, the growth of our children and controls all our ecosystems. Here, we discuss the fundamental aspects of DNA storage and recent advances in this field, with special emphasis on natural processes and solutions that can be exploited. We po...

Descripción completa

Detalles Bibliográficos
Autores principales: Bencurova, Elena, Akash, Aman, Dobson, Renwick C.J., Dandekar, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932295/
https://www.ncbi.nlm.nih.gov/pubmed/36817961
http://dx.doi.org/10.1016/j.csbj.2023.01.045
_version_ 1784889423868985344
author Bencurova, Elena
Akash, Aman
Dobson, Renwick C.J.
Dandekar, Thomas
author_facet Bencurova, Elena
Akash, Aman
Dobson, Renwick C.J.
Dandekar, Thomas
author_sort Bencurova, Elena
collection PubMed
description Natural DNA storage allows cellular differentiation, evolution, the growth of our children and controls all our ecosystems. Here, we discuss the fundamental aspects of DNA storage and recent advances in this field, with special emphasis on natural processes and solutions that can be exploited. We point out new ways of efficient DNA and nucleotide storage that are inspired by nature. Within a few years DNA-based information storage may become an attractive and natural complementation to current electronic data storage systems. We discuss rapid and directed access (e.g. DNA elements such as promotors, enhancers), regulatory signals and modulation (e.g. lncRNA) as well as integrated high-density storage and processing modules (e.g. chromosomal territories). There is pragmatic DNA storage for use in biotechnology and human genetics. We examine DNA storage as an approach for synthetic biology (e.g. light-controlled nucleotide processing enzymes). The natural polymers of DNA and RNA offer much for direct storage operations (read-in, read-out, access control). The inbuilt parallelism (many molecules at many places working at the same time) is important for fast processing of information. Using biology concepts from chromosomal storage, nucleic acid processing as well as polymer material sciences such as electronical effects in enzymes, graphene, nanocellulose up to DNA macramé , DNA wires and DNA-based aptamer field effect transistors will open up new applications gradually replacing classical information storage methods in ever more areas over time (decades).
format Online
Article
Text
id pubmed-9932295
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Research Network of Computational and Structural Biotechnology
record_format MEDLINE/PubMed
spelling pubmed-99322952023-02-17 DNA storage—from natural biology to synthetic biology Bencurova, Elena Akash, Aman Dobson, Renwick C.J. Dandekar, Thomas Comput Struct Biotechnol J Review Natural DNA storage allows cellular differentiation, evolution, the growth of our children and controls all our ecosystems. Here, we discuss the fundamental aspects of DNA storage and recent advances in this field, with special emphasis on natural processes and solutions that can be exploited. We point out new ways of efficient DNA and nucleotide storage that are inspired by nature. Within a few years DNA-based information storage may become an attractive and natural complementation to current electronic data storage systems. We discuss rapid and directed access (e.g. DNA elements such as promotors, enhancers), regulatory signals and modulation (e.g. lncRNA) as well as integrated high-density storage and processing modules (e.g. chromosomal territories). There is pragmatic DNA storage for use in biotechnology and human genetics. We examine DNA storage as an approach for synthetic biology (e.g. light-controlled nucleotide processing enzymes). The natural polymers of DNA and RNA offer much for direct storage operations (read-in, read-out, access control). The inbuilt parallelism (many molecules at many places working at the same time) is important for fast processing of information. Using biology concepts from chromosomal storage, nucleic acid processing as well as polymer material sciences such as electronical effects in enzymes, graphene, nanocellulose up to DNA macramé , DNA wires and DNA-based aptamer field effect transistors will open up new applications gradually replacing classical information storage methods in ever more areas over time (decades). Research Network of Computational and Structural Biotechnology 2023-02-02 /pmc/articles/PMC9932295/ /pubmed/36817961 http://dx.doi.org/10.1016/j.csbj.2023.01.045 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Bencurova, Elena
Akash, Aman
Dobson, Renwick C.J.
Dandekar, Thomas
DNA storage—from natural biology to synthetic biology
title DNA storage—from natural biology to synthetic biology
title_full DNA storage—from natural biology to synthetic biology
title_fullStr DNA storage—from natural biology to synthetic biology
title_full_unstemmed DNA storage—from natural biology to synthetic biology
title_short DNA storage—from natural biology to synthetic biology
title_sort dna storage—from natural biology to synthetic biology
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932295/
https://www.ncbi.nlm.nih.gov/pubmed/36817961
http://dx.doi.org/10.1016/j.csbj.2023.01.045
work_keys_str_mv AT bencurovaelena dnastoragefromnaturalbiologytosyntheticbiology
AT akashaman dnastoragefromnaturalbiologytosyntheticbiology
AT dobsonrenwickcj dnastoragefromnaturalbiologytosyntheticbiology
AT dandekarthomas dnastoragefromnaturalbiologytosyntheticbiology