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Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells

Grammatophyllum speciosum is a traditional plant with beneficial functionalities for health. G. speciosum extracts can inhibit collagenase and nitric oxide without cellular toxicity in keratinocytes. The extracts have shown potential for use and formulation as cosmeceutical ingredients. However, the...

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Detalles Bibliográficos
Autores principales: Yingchutrakul, Yodying, Krobthong, Sucheewin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932674/
https://www.ncbi.nlm.nih.gov/pubmed/36819907
http://dx.doi.org/10.1016/j.dib.2023.108937
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author Yingchutrakul, Yodying
Krobthong, Sucheewin
author_facet Yingchutrakul, Yodying
Krobthong, Sucheewin
author_sort Yingchutrakul, Yodying
collection PubMed
description Grammatophyllum speciosum is a traditional plant with beneficial functionalities for health. G. speciosum extracts can inhibit collagenase and nitric oxide without cellular toxicity in keratinocytes. The extracts have shown potential for use and formulation as cosmeceutical ingredients. However, the molecular mechanisms underlying these activities remain unknown. In this dataset, we used a proteomics approach to clarify the proteins that participate in the response of RAW264.7 macrophage cells to G. speciosum extracts. Cells were divided into two experimental groups, i.e., the control and treatment groups. In turn, the treatment group included two subgroups that were treated with 20 and 100  µg/mL of the extracts, respectively. The experiments were conducted using two biological replicates. The dataset was obtained from label-free proteomics using high-resolution tandem mass spectroscopy (LC-MS/MS) with four technical replicates. The quality control (QC) of the proteomics dataset was carried out using chromatography at the MS1 and MS2 levels, peptide mass deviation, peptide mass cleavage, sequence length, and total peptide intensity. The global proteome profile was analyzed using a principal component analysis (PCA). These datasets can clarify the potential pathways or proteins involved in the response to the extracts, to support their potential applicability for the development of cosmeceutical ingredients.
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spelling pubmed-99326742023-02-17 Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells Yingchutrakul, Yodying Krobthong, Sucheewin Data Brief Data Article Grammatophyllum speciosum is a traditional plant with beneficial functionalities for health. G. speciosum extracts can inhibit collagenase and nitric oxide without cellular toxicity in keratinocytes. The extracts have shown potential for use and formulation as cosmeceutical ingredients. However, the molecular mechanisms underlying these activities remain unknown. In this dataset, we used a proteomics approach to clarify the proteins that participate in the response of RAW264.7 macrophage cells to G. speciosum extracts. Cells were divided into two experimental groups, i.e., the control and treatment groups. In turn, the treatment group included two subgroups that were treated with 20 and 100  µg/mL of the extracts, respectively. The experiments were conducted using two biological replicates. The dataset was obtained from label-free proteomics using high-resolution tandem mass spectroscopy (LC-MS/MS) with four technical replicates. The quality control (QC) of the proteomics dataset was carried out using chromatography at the MS1 and MS2 levels, peptide mass deviation, peptide mass cleavage, sequence length, and total peptide intensity. The global proteome profile was analyzed using a principal component analysis (PCA). These datasets can clarify the potential pathways or proteins involved in the response to the extracts, to support their potential applicability for the development of cosmeceutical ingredients. Elsevier 2023-01-26 /pmc/articles/PMC9932674/ /pubmed/36819907 http://dx.doi.org/10.1016/j.dib.2023.108937 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Yingchutrakul, Yodying
Krobthong, Sucheewin
Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title_full Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title_fullStr Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title_full_unstemmed Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title_short Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
title_sort proteomics dataset for the analysis of the effects of grammatophyllum speciosum extracts on raw 264.7 cells
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9932674/
https://www.ncbi.nlm.nih.gov/pubmed/36819907
http://dx.doi.org/10.1016/j.dib.2023.108937
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