Cargando…
Optimization of Diffusion-Ordered NMR Spectroscopy Experiments for High-Throughput Automation in Human Metabolic Phenotyping
[Image: see text] The diffusion-ordered nuclear magnetic resonance spectroscopy (DOSY) experiment allows the calculation of diffusion coefficient values of metabolites in complex mixtures. However, this experiment has not yet been broadly used for metabolic profiling due to lack of a standardized pr...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933041/ https://www.ncbi.nlm.nih.gov/pubmed/36720172 http://dx.doi.org/10.1021/acs.analchem.2c04066 |
_version_ | 1784889591293018112 |
---|---|
author | Harvey, Nikita Takis, Panteleimon G Lindon, John C Li, Jia V Jiménez, Beatriz |
author_facet | Harvey, Nikita Takis, Panteleimon G Lindon, John C Li, Jia V Jiménez, Beatriz |
author_sort | Harvey, Nikita |
collection | PubMed |
description | [Image: see text] The diffusion-ordered nuclear magnetic resonance spectroscopy (DOSY) experiment allows the calculation of diffusion coefficient values of metabolites in complex mixtures. However, this experiment has not yet been broadly used for metabolic profiling due to lack of a standardized protocol. Here we propose a pipeline for the DOSY experimental setup and data processing in metabolic phenotyping studies. Due to the complexity of biological samples, three experiments (a standard DOSY, a relaxation-edited DOSY, and a diffusion-edited DOSY) have been optimized to provide DOSY metabolic profiles with peak-picked diffusion coefficients for over 90% of signals visible in the one-dimensional (1)H general biofluid profile in as little as 3 min 36 s. The developed parameter sets and tools are straightforward to implement and can facilitate the use of DOSY for metabolic profiling of human blood plasma and urine samples. |
format | Online Article Text |
id | pubmed-9933041 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-99330412023-02-17 Optimization of Diffusion-Ordered NMR Spectroscopy Experiments for High-Throughput Automation in Human Metabolic Phenotyping Harvey, Nikita Takis, Panteleimon G Lindon, John C Li, Jia V Jiménez, Beatriz Anal Chem [Image: see text] The diffusion-ordered nuclear magnetic resonance spectroscopy (DOSY) experiment allows the calculation of diffusion coefficient values of metabolites in complex mixtures. However, this experiment has not yet been broadly used for metabolic profiling due to lack of a standardized protocol. Here we propose a pipeline for the DOSY experimental setup and data processing in metabolic phenotyping studies. Due to the complexity of biological samples, three experiments (a standard DOSY, a relaxation-edited DOSY, and a diffusion-edited DOSY) have been optimized to provide DOSY metabolic profiles with peak-picked diffusion coefficients for over 90% of signals visible in the one-dimensional (1)H general biofluid profile in as little as 3 min 36 s. The developed parameter sets and tools are straightforward to implement and can facilitate the use of DOSY for metabolic profiling of human blood plasma and urine samples. American Chemical Society 2023-01-31 /pmc/articles/PMC9933041/ /pubmed/36720172 http://dx.doi.org/10.1021/acs.analchem.2c04066 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Harvey, Nikita Takis, Panteleimon G Lindon, John C Li, Jia V Jiménez, Beatriz Optimization of Diffusion-Ordered NMR Spectroscopy Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title | Optimization
of Diffusion-Ordered NMR Spectroscopy
Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title_full | Optimization
of Diffusion-Ordered NMR Spectroscopy
Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title_fullStr | Optimization
of Diffusion-Ordered NMR Spectroscopy
Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title_full_unstemmed | Optimization
of Diffusion-Ordered NMR Spectroscopy
Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title_short | Optimization
of Diffusion-Ordered NMR Spectroscopy
Experiments for High-Throughput Automation in Human Metabolic Phenotyping |
title_sort | optimization
of diffusion-ordered nmr spectroscopy
experiments for high-throughput automation in human metabolic phenotyping |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933041/ https://www.ncbi.nlm.nih.gov/pubmed/36720172 http://dx.doi.org/10.1021/acs.analchem.2c04066 |
work_keys_str_mv | AT harveynikita optimizationofdiffusionorderednmrspectroscopyexperimentsforhighthroughputautomationinhumanmetabolicphenotyping AT takispanteleimong optimizationofdiffusionorderednmrspectroscopyexperimentsforhighthroughputautomationinhumanmetabolicphenotyping AT lindonjohnc optimizationofdiffusionorderednmrspectroscopyexperimentsforhighthroughputautomationinhumanmetabolicphenotyping AT lijiav optimizationofdiffusionorderednmrspectroscopyexperimentsforhighthroughputautomationinhumanmetabolicphenotyping AT jimenezbeatriz optimizationofdiffusionorderednmrspectroscopyexperimentsforhighthroughputautomationinhumanmetabolicphenotyping |