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First draft genome of Thecaphora frezii, causal agent of peanut smut disease

OBJECTIVES: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen....

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Autores principales: Arias, Renee S., Conforto, Cinthia, Orner, Valerie A., Carloni, Edgardo J., Soave, Juan H., Massa, Alicia N., Lamb, Marshall C., Bernardi-Lima, Nelson, Rago, Alejandro M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933313/
https://www.ncbi.nlm.nih.gov/pubmed/36793017
http://dx.doi.org/10.1186/s12863-023-01113-w
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author Arias, Renee S.
Conforto, Cinthia
Orner, Valerie A.
Carloni, Edgardo J.
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernardi-Lima, Nelson
Rago, Alejandro M.
author_facet Arias, Renee S.
Conforto, Cinthia
Orner, Valerie A.
Carloni, Edgardo J.
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernardi-Lima, Nelson
Rago, Alejandro M.
author_sort Arias, Renee S.
collection PubMed
description OBJECTIVES: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. DATA DESCRIPTION: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10.
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spelling pubmed-99333132023-02-17 First draft genome of Thecaphora frezii, causal agent of peanut smut disease Arias, Renee S. Conforto, Cinthia Orner, Valerie A. Carloni, Edgardo J. Soave, Juan H. Massa, Alicia N. Lamb, Marshall C. Bernardi-Lima, Nelson Rago, Alejandro M. BMC Genom Data Data Note OBJECTIVES: The fungal pathogen Thecaphora frezii Carranza & Lindquist causes peanut smut, a severe disease currently endemic in Argentina. To study the ecology of T. frezii and to understand the mechanisms of smut resistance in peanut plants, it is crucial to know the genetics of this pathogen. The objective of this work was to isolate the pathogen and generate the first draft genome of T. frezii that will be the basis for analyzing its potential genetic diversity and its interaction with peanut cultivars. Our research group is working to identify peanut germplasm with smut resistance and to understand the genetics of the pathogen. Knowing the genome of T. frezii will help analyze potential variants of this pathogen and contribute to develop enhanced peanut germplasm with broader and long-lasting resistance. DATA DESCRIPTION: Thecaphora frezii isolate IPAVE 0401 (here referred as T.f.B7) was obtained from a single hyphal-tip culture, its DNA was sequenced using Pacific Biosciences Sequel II (PacBio) and Illumina NovaSeq6000 (Nova). Data from both sequencing platforms were combined and the de novo assembling estimated a 29.3 Mb genome size. Completeness of the genome examined using Benchmarking Universal Single-Copy Orthologs (BUSCO) showed the assembly had 84.6% of the 758 genes in fungi_odb10. BioMed Central 2023-02-16 /pmc/articles/PMC9933313/ /pubmed/36793017 http://dx.doi.org/10.1186/s12863-023-01113-w Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Arias, Renee S.
Conforto, Cinthia
Orner, Valerie A.
Carloni, Edgardo J.
Soave, Juan H.
Massa, Alicia N.
Lamb, Marshall C.
Bernardi-Lima, Nelson
Rago, Alejandro M.
First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_full First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_fullStr First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_full_unstemmed First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_short First draft genome of Thecaphora frezii, causal agent of peanut smut disease
title_sort first draft genome of thecaphora frezii, causal agent of peanut smut disease
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933313/
https://www.ncbi.nlm.nih.gov/pubmed/36793017
http://dx.doi.org/10.1186/s12863-023-01113-w
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