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Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
[Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933436/ https://www.ncbi.nlm.nih.gov/pubmed/36818588 http://dx.doi.org/10.1021/acs.chemmater.2c03207 |
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author | Vizoso, Daniel Subhash, Ghatu Rajan, Krishna Dingreville, Rémi |
author_facet | Vizoso, Daniel Subhash, Ghatu Rajan, Krishna Dingreville, Rémi |
author_sort | Vizoso, Daniel |
collection | PubMed |
description | [Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult and convoluted. To address this challenge, we present a reliable protocol based on supervised manifold learning techniques meant to connect vibrational spectra to a variety of complex and diverse atomic structure configurations. As an illustration, we examined a large database of virtual vibrational spectroscopy profiles generated from atomistic simulations for silicon structures subjected to different stress, amorphization, and disordering states. We evaluated representative features in those spectra via various linear and nonlinear dimensionality reduction techniques and used the reduced representation of those features with decision trees to correlate them with structural information unavailable through classical human-identifiable peak analysis. We show that our trained model accurately (over 97% accuracy) and robustly (insensitive to noise) disentangles the contribution from the different material states, hence demonstrating a comprehensive decoding of spectroscopic profiles beyond classical (human-identifiable) peak analysis. |
format | Online Article Text |
id | pubmed-9933436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-99334362023-02-17 Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis Vizoso, Daniel Subhash, Ghatu Rajan, Krishna Dingreville, Rémi Chem Mater [Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult and convoluted. To address this challenge, we present a reliable protocol based on supervised manifold learning techniques meant to connect vibrational spectra to a variety of complex and diverse atomic structure configurations. As an illustration, we examined a large database of virtual vibrational spectroscopy profiles generated from atomistic simulations for silicon structures subjected to different stress, amorphization, and disordering states. We evaluated representative features in those spectra via various linear and nonlinear dimensionality reduction techniques and used the reduced representation of those features with decision trees to correlate them with structural information unavailable through classical human-identifiable peak analysis. We show that our trained model accurately (over 97% accuracy) and robustly (insensitive to noise) disentangles the contribution from the different material states, hence demonstrating a comprehensive decoding of spectroscopic profiles beyond classical (human-identifiable) peak analysis. American Chemical Society 2023-01-24 /pmc/articles/PMC9933436/ /pubmed/36818588 http://dx.doi.org/10.1021/acs.chemmater.2c03207 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Vizoso, Daniel Subhash, Ghatu Rajan, Krishna Dingreville, Rémi Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis |
title | Connecting
Vibrational Spectroscopy to Atomic Structure
via Supervised Manifold Learning: Beyond Peak Analysis |
title_full | Connecting
Vibrational Spectroscopy to Atomic Structure
via Supervised Manifold Learning: Beyond Peak Analysis |
title_fullStr | Connecting
Vibrational Spectroscopy to Atomic Structure
via Supervised Manifold Learning: Beyond Peak Analysis |
title_full_unstemmed | Connecting
Vibrational Spectroscopy to Atomic Structure
via Supervised Manifold Learning: Beyond Peak Analysis |
title_short | Connecting
Vibrational Spectroscopy to Atomic Structure
via Supervised Manifold Learning: Beyond Peak Analysis |
title_sort | connecting
vibrational spectroscopy to atomic structure
via supervised manifold learning: beyond peak analysis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933436/ https://www.ncbi.nlm.nih.gov/pubmed/36818588 http://dx.doi.org/10.1021/acs.chemmater.2c03207 |
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