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Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis

[Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult a...

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Autores principales: Vizoso, Daniel, Subhash, Ghatu, Rajan, Krishna, Dingreville, Rémi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933436/
https://www.ncbi.nlm.nih.gov/pubmed/36818588
http://dx.doi.org/10.1021/acs.chemmater.2c03207
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author Vizoso, Daniel
Subhash, Ghatu
Rajan, Krishna
Dingreville, Rémi
author_facet Vizoso, Daniel
Subhash, Ghatu
Rajan, Krishna
Dingreville, Rémi
author_sort Vizoso, Daniel
collection PubMed
description [Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult and convoluted. To address this challenge, we present a reliable protocol based on supervised manifold learning techniques meant to connect vibrational spectra to a variety of complex and diverse atomic structure configurations. As an illustration, we examined a large database of virtual vibrational spectroscopy profiles generated from atomistic simulations for silicon structures subjected to different stress, amorphization, and disordering states. We evaluated representative features in those spectra via various linear and nonlinear dimensionality reduction techniques and used the reduced representation of those features with decision trees to correlate them with structural information unavailable through classical human-identifiable peak analysis. We show that our trained model accurately (over 97% accuracy) and robustly (insensitive to noise) disentangles the contribution from the different material states, hence demonstrating a comprehensive decoding of spectroscopic profiles beyond classical (human-identifiable) peak analysis.
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spelling pubmed-99334362023-02-17 Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis Vizoso, Daniel Subhash, Ghatu Rajan, Krishna Dingreville, Rémi Chem Mater [Image: see text] Vibrational spectroscopy is a nondestructive technique commonly used in chemical and physical analyses to determine atomic structures and associated properties. However, the evaluation and interpretation of spectroscopic profiles based on human-identifiable peaks can be difficult and convoluted. To address this challenge, we present a reliable protocol based on supervised manifold learning techniques meant to connect vibrational spectra to a variety of complex and diverse atomic structure configurations. As an illustration, we examined a large database of virtual vibrational spectroscopy profiles generated from atomistic simulations for silicon structures subjected to different stress, amorphization, and disordering states. We evaluated representative features in those spectra via various linear and nonlinear dimensionality reduction techniques and used the reduced representation of those features with decision trees to correlate them with structural information unavailable through classical human-identifiable peak analysis. We show that our trained model accurately (over 97% accuracy) and robustly (insensitive to noise) disentangles the contribution from the different material states, hence demonstrating a comprehensive decoding of spectroscopic profiles beyond classical (human-identifiable) peak analysis. American Chemical Society 2023-01-24 /pmc/articles/PMC9933436/ /pubmed/36818588 http://dx.doi.org/10.1021/acs.chemmater.2c03207 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Vizoso, Daniel
Subhash, Ghatu
Rajan, Krishna
Dingreville, Rémi
Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title_full Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title_fullStr Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title_full_unstemmed Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title_short Connecting Vibrational Spectroscopy to Atomic Structure via Supervised Manifold Learning: Beyond Peak Analysis
title_sort connecting vibrational spectroscopy to atomic structure via supervised manifold learning: beyond peak analysis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933436/
https://www.ncbi.nlm.nih.gov/pubmed/36818588
http://dx.doi.org/10.1021/acs.chemmater.2c03207
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