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Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri

Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest...

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Autores principales: Shippy, Teresa D., Miller, Sherry, Tamayo, Blessy, Hosmani, Prashant S., Flores-Gonzalez, Mirella, Mueller, Lukas A., Hunter, Wayne B., Brown, Susan J., D’Elia, Tom, Saha, Surya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: GigaScience Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933517/
https://www.ncbi.nlm.nih.gov/pubmed/36824529
http://dx.doi.org/10.46471/gigabyte.46
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author Shippy, Teresa D.
Miller, Sherry
Tamayo, Blessy
Hosmani, Prashant S.
Flores-Gonzalez, Mirella
Mueller, Lukas A.
Hunter, Wayne B.
Brown, Susan J.
D’Elia, Tom
Saha, Surya
author_facet Shippy, Teresa D.
Miller, Sherry
Tamayo, Blessy
Hosmani, Prashant S.
Flores-Gonzalez, Mirella
Mueller, Lukas A.
Hunter, Wayne B.
Brown, Susan J.
D’Elia, Tom
Saha, Surya
author_sort Shippy, Teresa D.
collection PubMed
description Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest control methods. The Asian citrus psyllid, Diaphorina citri, carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease. We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create high-quality gene models to aid the design of interdictory molecules for pest control. We categorized the D. citri chitinases according to an established classification scheme and re-evaluated the classification of chitinases in other hemipterans. In addition to chitinases from known groups, we identified a novel class of chitinases present in D. citri and several related hemipterans that appears to be the result of horizontal gene transfer.
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spelling pubmed-99335172023-02-22 Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri Shippy, Teresa D. Miller, Sherry Tamayo, Blessy Hosmani, Prashant S. Flores-Gonzalez, Mirella Mueller, Lukas A. Hunter, Wayne B. Brown, Susan J. D’Elia, Tom Saha, Surya GigaByte Data Release Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest control methods. The Asian citrus psyllid, Diaphorina citri, carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease. We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create high-quality gene models to aid the design of interdictory molecules for pest control. We categorized the D. citri chitinases according to an established classification scheme and re-evaluated the classification of chitinases in other hemipterans. In addition to chitinases from known groups, we identified a novel class of chitinases present in D. citri and several related hemipterans that appears to be the result of horizontal gene transfer. GigaScience Press 2022-03-17 /pmc/articles/PMC9933517/ /pubmed/36824529 http://dx.doi.org/10.46471/gigabyte.46 Text en © The Author(s) 2022. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Release
Shippy, Teresa D.
Miller, Sherry
Tamayo, Blessy
Hosmani, Prashant S.
Flores-Gonzalez, Mirella
Mueller, Lukas A.
Hunter, Wayne B.
Brown, Susan J.
D’Elia, Tom
Saha, Surya
Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title_full Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title_fullStr Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title_full_unstemmed Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title_short Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
title_sort manual curation and phylogenetic analysis of chitinase family genes in the asian citrus psyllid, diaphorina citri
topic Data Release
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933517/
https://www.ncbi.nlm.nih.gov/pubmed/36824529
http://dx.doi.org/10.46471/gigabyte.46
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