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Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
GigaScience Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933517/ https://www.ncbi.nlm.nih.gov/pubmed/36824529 http://dx.doi.org/10.46471/gigabyte.46 |
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author | Shippy, Teresa D. Miller, Sherry Tamayo, Blessy Hosmani, Prashant S. Flores-Gonzalez, Mirella Mueller, Lukas A. Hunter, Wayne B. Brown, Susan J. D’Elia, Tom Saha, Surya |
author_facet | Shippy, Teresa D. Miller, Sherry Tamayo, Blessy Hosmani, Prashant S. Flores-Gonzalez, Mirella Mueller, Lukas A. Hunter, Wayne B. Brown, Susan J. D’Elia, Tom Saha, Surya |
author_sort | Shippy, Teresa D. |
collection | PubMed |
description | Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest control methods. The Asian citrus psyllid, Diaphorina citri, carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease. We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create high-quality gene models to aid the design of interdictory molecules for pest control. We categorized the D. citri chitinases according to an established classification scheme and re-evaluated the classification of chitinases in other hemipterans. In addition to chitinases from known groups, we identified a novel class of chitinases present in D. citri and several related hemipterans that appears to be the result of horizontal gene transfer. |
format | Online Article Text |
id | pubmed-9933517 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | GigaScience Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-99335172023-02-22 Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri Shippy, Teresa D. Miller, Sherry Tamayo, Blessy Hosmani, Prashant S. Flores-Gonzalez, Mirella Mueller, Lukas A. Hunter, Wayne B. Brown, Susan J. D’Elia, Tom Saha, Surya GigaByte Data Release Chitinases are enzymes that digest the polysaccharide polymer chitin. During insect development, breakdown of chitin is an essential step in molting of the exoskeleton. Knockdown of chitinases required for molting is lethal to insects, making chitinase genes an interesting target for RNAi-based pest control methods. The Asian citrus psyllid, Diaphorina citri, carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease. We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create high-quality gene models to aid the design of interdictory molecules for pest control. We categorized the D. citri chitinases according to an established classification scheme and re-evaluated the classification of chitinases in other hemipterans. In addition to chitinases from known groups, we identified a novel class of chitinases present in D. citri and several related hemipterans that appears to be the result of horizontal gene transfer. GigaScience Press 2022-03-17 /pmc/articles/PMC9933517/ /pubmed/36824529 http://dx.doi.org/10.46471/gigabyte.46 Text en © The Author(s) 2022. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Release Shippy, Teresa D. Miller, Sherry Tamayo, Blessy Hosmani, Prashant S. Flores-Gonzalez, Mirella Mueller, Lukas A. Hunter, Wayne B. Brown, Susan J. D’Elia, Tom Saha, Surya Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title | Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title_full | Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title_fullStr | Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title_full_unstemmed | Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title_short | Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri |
title_sort | manual curation and phylogenetic analysis of chitinase family genes in the asian citrus psyllid, diaphorina citri |
topic | Data Release |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933517/ https://www.ncbi.nlm.nih.gov/pubmed/36824529 http://dx.doi.org/10.46471/gigabyte.46 |
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