SCAMPP+FastTree: improving scalability for likelihood-based phylogenetic placement

SUMMARY: Phylogenetic placement is the problem of placing ‘query’ sequences into an existing tree (called a ‘backbone tree’). One of the most accurate phylogenetic placement methods to date is the maximum likelihood-based method pplacer, using RAxML to estimate numeric parameters on the backbone tre...

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Detalles Bibliográficos
Autores principales: Chu, Gillian, Warnow, Tandy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933845/
https://www.ncbi.nlm.nih.gov/pubmed/36818728
http://dx.doi.org/10.1093/bioadv/vbad008

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9933845/
https://www.ncbi.nlm.nih.gov/pubmed/36818728
http://dx.doi.org/10.1093/bioadv/vbad008

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