Cargando…
The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma
Osteosarcoma (OS) is a malignant tumor with an extremely poor prognosis, especially in progressive patients. Immunotherapy based on immune checkpoint inhibitors (ICIs) is considered to be a promising treatment option for OS. Due to tumor heterogeneity, only a minority of patients benefit from immuno...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9934978/ https://www.ncbi.nlm.nih.gov/pubmed/36816742 http://dx.doi.org/10.1155/2023/6563609 |
_version_ | 1784889983211929600 |
---|---|
author | Chen, Yu Yan, Wei Wang, Hongqing Ou, Zhiliang Chen, Huihong Huang, Zhenhua Yang, Jinlian Liu, Biqiong Ou, Fanjie Zhang, Huang |
author_facet | Chen, Yu Yan, Wei Wang, Hongqing Ou, Zhiliang Chen, Huihong Huang, Zhenhua Yang, Jinlian Liu, Biqiong Ou, Fanjie Zhang, Huang |
author_sort | Chen, Yu |
collection | PubMed |
description | Osteosarcoma (OS) is a malignant tumor with an extremely poor prognosis, especially in progressive patients. Immunotherapy based on immune checkpoint inhibitors (ICIs) is considered to be a promising treatment option for OS. Due to tumor heterogeneity, only a minority of patients benefit from immunotherapy. Therefore, it is urgent to explore a model that can accurately assess the response of OS to immunotherapy. In this study, we obtained the single-cell RNA sequencing datasets of OS patients from public databases and defined 34 cell clusters by dimensional reduction and clustering analysis. PTPRC was applied to identify immune cell clusters and nonimmune cell clusters. Next, we performed clustering analysis on the immune cell clusters and obtained 25 immune cell subclusters. Immune cells were labeled with CD8A and CD8B to obtain CD8(+) T cell clusters. Meanwhile, we extracted the differentially expressed genes (DEGs) of CD8(+) T cell clusters and other immune cell clusters. Furthermore, we constructed a prognostic model (CD8-DEG model) based on the obtained DEGs of CD8(+) T cells, and verified the excellent predictive ability of this model for the prognosis of OS. Moreover, we further investigated the value of the CD8-DEG model. The results indicated that the risk score of the CD8-DEG model was an independent risk factor for OS patients. Finally, we revealed that the risk score of the CD8-DEG model correlates with the immune profile of OS and can be used to evaluate the response of OS to immunotherapy. In conclusion, our study revealed the critical role of CD8 cells in OS. The risk score model based on CD8-DEGs can provide guidance for prognosis and immunotherapy of OS. |
format | Online Article Text |
id | pubmed-9934978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-99349782023-02-17 The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma Chen, Yu Yan, Wei Wang, Hongqing Ou, Zhiliang Chen, Huihong Huang, Zhenhua Yang, Jinlian Liu, Biqiong Ou, Fanjie Zhang, Huang Mediators Inflamm Research Article Osteosarcoma (OS) is a malignant tumor with an extremely poor prognosis, especially in progressive patients. Immunotherapy based on immune checkpoint inhibitors (ICIs) is considered to be a promising treatment option for OS. Due to tumor heterogeneity, only a minority of patients benefit from immunotherapy. Therefore, it is urgent to explore a model that can accurately assess the response of OS to immunotherapy. In this study, we obtained the single-cell RNA sequencing datasets of OS patients from public databases and defined 34 cell clusters by dimensional reduction and clustering analysis. PTPRC was applied to identify immune cell clusters and nonimmune cell clusters. Next, we performed clustering analysis on the immune cell clusters and obtained 25 immune cell subclusters. Immune cells were labeled with CD8A and CD8B to obtain CD8(+) T cell clusters. Meanwhile, we extracted the differentially expressed genes (DEGs) of CD8(+) T cell clusters and other immune cell clusters. Furthermore, we constructed a prognostic model (CD8-DEG model) based on the obtained DEGs of CD8(+) T cells, and verified the excellent predictive ability of this model for the prognosis of OS. Moreover, we further investigated the value of the CD8-DEG model. The results indicated that the risk score of the CD8-DEG model was an independent risk factor for OS patients. Finally, we revealed that the risk score of the CD8-DEG model correlates with the immune profile of OS and can be used to evaluate the response of OS to immunotherapy. In conclusion, our study revealed the critical role of CD8 cells in OS. The risk score model based on CD8-DEGs can provide guidance for prognosis and immunotherapy of OS. Hindawi 2023-02-09 /pmc/articles/PMC9934978/ /pubmed/36816742 http://dx.doi.org/10.1155/2023/6563609 Text en Copyright © 2023 Yu Chen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Yu Yan, Wei Wang, Hongqing Ou, Zhiliang Chen, Huihong Huang, Zhenhua Yang, Jinlian Liu, Biqiong Ou, Fanjie Zhang, Huang The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title | The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title_full | The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title_fullStr | The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title_full_unstemmed | The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title_short | The Prognostic Model Established by the Differential Expression Genes Based on CD8(+) T Cells to Evaluate the Prognosis and the Response to Immunotherapy in Osteosarcoma |
title_sort | prognostic model established by the differential expression genes based on cd8(+) t cells to evaluate the prognosis and the response to immunotherapy in osteosarcoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9934978/ https://www.ncbi.nlm.nih.gov/pubmed/36816742 http://dx.doi.org/10.1155/2023/6563609 |
work_keys_str_mv | AT chenyu theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT yanwei theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT wanghongqing theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT ouzhiliang theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT chenhuihong theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT huangzhenhua theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT yangjinlian theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT liubiqiong theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT oufanjie theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT zhanghuang theprognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT chenyu prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT yanwei prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT wanghongqing prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT ouzhiliang prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT chenhuihong prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT huangzhenhua prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT yangjinlian prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT liubiqiong prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT oufanjie prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma AT zhanghuang prognosticmodelestablishedbythedifferentialexpressiongenesbasedoncd8tcellstoevaluatetheprognosisandtheresponsetoimmunotherapyinosteosarcoma |