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Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana
INTRODUCTION: Kac is a model for all acylation modification studies. Kac plays a critical role in eukaryotes and prokaryotes. It is mainly involved in six major biological functions: gene expression, signal transduction, cell development, protein conversion, metabolism, and metabolite transport. MET...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935083/ https://www.ncbi.nlm.nih.gov/pubmed/36819054 http://dx.doi.org/10.3389/fmicb.2023.1046163 |
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author | Gong, Yanwei Li, Ying Liu, Dongyang Jiang, Lianqiang Liang, Hui Wu, Yuanhua Wang, Fenglong Yang, Jinguang |
author_facet | Gong, Yanwei Li, Ying Liu, Dongyang Jiang, Lianqiang Liang, Hui Wu, Yuanhua Wang, Fenglong Yang, Jinguang |
author_sort | Gong, Yanwei |
collection | PubMed |
description | INTRODUCTION: Kac is a model for all acylation modification studies. Kac plays a critical role in eukaryotes and prokaryotes. It is mainly involved in six major biological functions: gene expression, signal transduction, cell development, protein conversion, metabolism, and metabolite transport. METHOD: We investigated and compared the acetylation modification of proteins in healthy and tomato spot wilt virus (TSWV)-infected Nicotiana benthamiana leaves. RESULT: We identified 3,418 acetylated lysine sites on 1962 proteins acetylation of proteins in the TSWV-infected and control groups were compared; it was observed that 408 sites on 294 proteins were upregulated and 284 sites on 219 proteins (involved in pentose phosphate, photosynthesis, and carbon fixation in photosynthesis) were downregulated after the infection. Overall, 35 conserved motifs were identified, of which xxxkxxxxx_K_ Rxxxxxxxxx represented 1,334 (31.63%) enrichment motifs and was the most common combination. Bioinformatic analysis revealed that most of the proteins with Kac sites were located in the chloroplast and cytoplasm. They were involved in biological processes, such as cellular and metabolic processes. DISCUSSION: In conclusion, our results revealed that Kac may participate in the regulation of TSWV infection in N. benthamiana. |
format | Online Article Text |
id | pubmed-9935083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99350832023-02-17 Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana Gong, Yanwei Li, Ying Liu, Dongyang Jiang, Lianqiang Liang, Hui Wu, Yuanhua Wang, Fenglong Yang, Jinguang Front Microbiol Microbiology INTRODUCTION: Kac is a model for all acylation modification studies. Kac plays a critical role in eukaryotes and prokaryotes. It is mainly involved in six major biological functions: gene expression, signal transduction, cell development, protein conversion, metabolism, and metabolite transport. METHOD: We investigated and compared the acetylation modification of proteins in healthy and tomato spot wilt virus (TSWV)-infected Nicotiana benthamiana leaves. RESULT: We identified 3,418 acetylated lysine sites on 1962 proteins acetylation of proteins in the TSWV-infected and control groups were compared; it was observed that 408 sites on 294 proteins were upregulated and 284 sites on 219 proteins (involved in pentose phosphate, photosynthesis, and carbon fixation in photosynthesis) were downregulated after the infection. Overall, 35 conserved motifs were identified, of which xxxkxxxxx_K_ Rxxxxxxxxx represented 1,334 (31.63%) enrichment motifs and was the most common combination. Bioinformatic analysis revealed that most of the proteins with Kac sites were located in the chloroplast and cytoplasm. They were involved in biological processes, such as cellular and metabolic processes. DISCUSSION: In conclusion, our results revealed that Kac may participate in the regulation of TSWV infection in N. benthamiana. Frontiers Media S.A. 2023-02-02 /pmc/articles/PMC9935083/ /pubmed/36819054 http://dx.doi.org/10.3389/fmicb.2023.1046163 Text en Copyright © 2023 Gong, Li, Liu, Jiang, Liang, Wu, Wang and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Gong, Yanwei Li, Ying Liu, Dongyang Jiang, Lianqiang Liang, Hui Wu, Yuanhua Wang, Fenglong Yang, Jinguang Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title | Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title_full | Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title_fullStr | Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title_full_unstemmed | Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title_short | Analysis of lysine acetylation in tomato spot wilt virus infection in Nicotiana benthamiana |
title_sort | analysis of lysine acetylation in tomato spot wilt virus infection in nicotiana benthamiana |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935083/ https://www.ncbi.nlm.nih.gov/pubmed/36819054 http://dx.doi.org/10.3389/fmicb.2023.1046163 |
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