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Smart IoMT-based segmentation of coronavirus infections using lung CT scans

Computed Tomography (CT) is one of the biomedical imaging modalities which are used to confirm COVID-19 cases and/or to identify infected areas in the lung. Therefore, this article aims at assisting this crucial radiological task by proposing squeeze-and-excitation networks (SENets) within the Inter...

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Autores principales: Karar, Mohamed Esmail, Khan, Z. Faizal, Alshahrani, Hussain, Reyad, Omar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: THE AUTHORS. Published by Elsevier BV on behalf of Faculty of Engineering, Alexandria University. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935282/
http://dx.doi.org/10.1016/j.aej.2023.02.020
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author Karar, Mohamed Esmail
Khan, Z. Faizal
Alshahrani, Hussain
Reyad, Omar
author_facet Karar, Mohamed Esmail
Khan, Z. Faizal
Alshahrani, Hussain
Reyad, Omar
author_sort Karar, Mohamed Esmail
collection PubMed
description Computed Tomography (CT) is one of the biomedical imaging modalities which are used to confirm COVID-19 cases and/or to identify infected areas in the lung. Therefore, this article aims at assisting this crucial radiological task by proposing squeeze-and-excitation networks (SENets) within the Internet of medical things (IoMT) framework for automated segmentation of COVID-19 infections in lung CT images. The proposed SE block has been directly integrated with deep residual networks to form Seresnets based on U-Net and LinkNet models. Extensive tests were conducted on a public COVID-19 CT dataset including 20 cases and 1800 + annotated slices to evaluate the segmentation results of our proposed method. The proposed Seresnet models showed a good performance with a Dice score of 0.73, structure similarity index of 0.98, enhanced alignment measure of 0.98, and mean absolute error of 0.06. This study demonstrated a new advanced tool for radiologists to achieve automatic segmentation of the COVID-19 infected areas using CT scans. The main prospect of this research work is deploying our proposed IoMT segmentation framework in the medical diagnosis routine of positive COVID-19 patients.
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spelling pubmed-99352822023-02-17 Smart IoMT-based segmentation of coronavirus infections using lung CT scans Karar, Mohamed Esmail Khan, Z. Faizal Alshahrani, Hussain Reyad, Omar Alexandria Engineering Journal Original Article Computed Tomography (CT) is one of the biomedical imaging modalities which are used to confirm COVID-19 cases and/or to identify infected areas in the lung. Therefore, this article aims at assisting this crucial radiological task by proposing squeeze-and-excitation networks (SENets) within the Internet of medical things (IoMT) framework for automated segmentation of COVID-19 infections in lung CT images. The proposed SE block has been directly integrated with deep residual networks to form Seresnets based on U-Net and LinkNet models. Extensive tests were conducted on a public COVID-19 CT dataset including 20 cases and 1800 + annotated slices to evaluate the segmentation results of our proposed method. The proposed Seresnet models showed a good performance with a Dice score of 0.73, structure similarity index of 0.98, enhanced alignment measure of 0.98, and mean absolute error of 0.06. This study demonstrated a new advanced tool for radiologists to achieve automatic segmentation of the COVID-19 infected areas using CT scans. The main prospect of this research work is deploying our proposed IoMT segmentation framework in the medical diagnosis routine of positive COVID-19 patients. THE AUTHORS. Published by Elsevier BV on behalf of Faculty of Engineering, Alexandria University. 2023-04-15 2023-02-17 /pmc/articles/PMC9935282/ http://dx.doi.org/10.1016/j.aej.2023.02.020 Text en © 2023 THE AUTHORS Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Article
Karar, Mohamed Esmail
Khan, Z. Faizal
Alshahrani, Hussain
Reyad, Omar
Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title_full Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title_fullStr Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title_full_unstemmed Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title_short Smart IoMT-based segmentation of coronavirus infections using lung CT scans
title_sort smart iomt-based segmentation of coronavirus infections using lung ct scans
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935282/
http://dx.doi.org/10.1016/j.aej.2023.02.020
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