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Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance
Monoclonal gammopathy of undetermined significance (MGUS) is a benign hematological condition with the potential to progress to malignant conditions including multiple myeloma and Waldenstrom macroglobulinemia. Medications that modify progression risk have yet to be identified. To investigate, we le...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935510/ https://www.ncbi.nlm.nih.gov/pubmed/36797276 http://dx.doi.org/10.1038/s41408-023-00798-7 |
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author | Ryu, Alexander J. Kumar, Shaji Dispenzieri, Angela Kyle, Robert A. Rajkumar, S. Vincent Kingsley, Thomas C. |
author_facet | Ryu, Alexander J. Kumar, Shaji Dispenzieri, Angela Kyle, Robert A. Rajkumar, S. Vincent Kingsley, Thomas C. |
author_sort | Ryu, Alexander J. |
collection | PubMed |
description | Monoclonal gammopathy of undetermined significance (MGUS) is a benign hematological condition with the potential to progress to malignant conditions including multiple myeloma and Waldenstrom macroglobulinemia. Medications that modify progression risk have yet to be identified. To investigate, we leveraged machine-learning and electronic health record (EHR) data to screen for drug repurposing candidates. We extracted clinical and laboratory data from a manually curated MGUS database, containing 16,752 MGUS patients diagnosed from January 1, 2000 through December 31, 2021, prospectively maintained at Mayo Clinic. We merged this with comorbidity and medication data from the EHR. Medications were mapped to 21 drug classes of interest. The XGBoost module was then used to train a primary Cox survival model; sensitivity analyses were also performed limiting the study group to those with non-IgM MGUS and those with M-spikes >0.3 g/dl. The impact of explanatory features was quantified as hazard ratios after generating distributions using bootstrapping. Medication data were available for 12,253 patients; those without medications data were excluded. Our model achieved a good fit of the data with inverse probability of censoring weights concordance index of 0.883. The presence of multivitamins, immunosuppression, non-coronary NSAIDS, proton pump inhibitors, vitamin D supplementation, opioids, statins and beta-blockers were associated with significantly lower hazard ratio for MGUS progression in our primary model; multivitamins and non-coronary NSAIDs remained significant across both sensitivity analyses. This work could inform subsequent prospective studies, or similar studies in other disease states. |
format | Online Article Text |
id | pubmed-9935510 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99355102023-02-18 Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance Ryu, Alexander J. Kumar, Shaji Dispenzieri, Angela Kyle, Robert A. Rajkumar, S. Vincent Kingsley, Thomas C. Blood Cancer J Article Monoclonal gammopathy of undetermined significance (MGUS) is a benign hematological condition with the potential to progress to malignant conditions including multiple myeloma and Waldenstrom macroglobulinemia. Medications that modify progression risk have yet to be identified. To investigate, we leveraged machine-learning and electronic health record (EHR) data to screen for drug repurposing candidates. We extracted clinical and laboratory data from a manually curated MGUS database, containing 16,752 MGUS patients diagnosed from January 1, 2000 through December 31, 2021, prospectively maintained at Mayo Clinic. We merged this with comorbidity and medication data from the EHR. Medications were mapped to 21 drug classes of interest. The XGBoost module was then used to train a primary Cox survival model; sensitivity analyses were also performed limiting the study group to those with non-IgM MGUS and those with M-spikes >0.3 g/dl. The impact of explanatory features was quantified as hazard ratios after generating distributions using bootstrapping. Medication data were available for 12,253 patients; those without medications data were excluded. Our model achieved a good fit of the data with inverse probability of censoring weights concordance index of 0.883. The presence of multivitamins, immunosuppression, non-coronary NSAIDS, proton pump inhibitors, vitamin D supplementation, opioids, statins and beta-blockers were associated with significantly lower hazard ratio for MGUS progression in our primary model; multivitamins and non-coronary NSAIDs remained significant across both sensitivity analyses. This work could inform subsequent prospective studies, or similar studies in other disease states. Nature Publishing Group UK 2023-02-17 /pmc/articles/PMC9935510/ /pubmed/36797276 http://dx.doi.org/10.1038/s41408-023-00798-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ryu, Alexander J. Kumar, Shaji Dispenzieri, Angela Kyle, Robert A. Rajkumar, S. Vincent Kingsley, Thomas C. Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title | Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title_full | Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title_fullStr | Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title_full_unstemmed | Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title_short | Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
title_sort | artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9935510/ https://www.ncbi.nlm.nih.gov/pubmed/36797276 http://dx.doi.org/10.1038/s41408-023-00798-7 |
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