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Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China

Accurate information concerning crown profile is critical in analyzing biological processes and providing a more accurate estimate of carbon balance, which is conducive to sustainable forest management and planning. The similarities between the types of data addressed with LSTM algorithms and crown...

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Autores principales: Chen, Yuling, Wang, Jianming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936141/
https://www.ncbi.nlm.nih.gov/pubmed/36818871
http://dx.doi.org/10.3389/fpls.2023.1093905
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author Chen, Yuling
Wang, Jianming
author_facet Chen, Yuling
Wang, Jianming
author_sort Chen, Yuling
collection PubMed
description Accurate information concerning crown profile is critical in analyzing biological processes and providing a more accurate estimate of carbon balance, which is conducive to sustainable forest management and planning. The similarities between the types of data addressed with LSTM algorithms and crown profile data make a compelling argument for the integration of deep learning into the crown profile modeling. Thus, the aim was to study the application of deep learning method LSTM and its variant algorithms in the crown profile modeling, using the crown profile database from Pinus yunnanensis secondary forests in Yunnan province, in southwest China. Furthermore, the SHAP (SHapley Additive exPlanations) was used to interpret the predictions of ensemble or deep learning models. The results showed that LSTM’s variant algorithms was competitive with traditional Vanila LSTM, but substantially outperformed ensemble learning model LightGBM. Specifically, the proposed Hybrid LSTM-LightGBM and Integrated LSTM-LightGBM have achieved a best forecasting performance on training set and testing set respectively. Furthermore, the feature importance analysis of LightGBM and Vanila LSTM presented that there were more factors that contribute significantly to Vanila LSTM model compared to LightGBM model. This phenomenon can explain why deep learning outperforms ensemble learning when there are more interrelated features.
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spelling pubmed-99361412023-02-18 Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China Chen, Yuling Wang, Jianming Front Plant Sci Plant Science Accurate information concerning crown profile is critical in analyzing biological processes and providing a more accurate estimate of carbon balance, which is conducive to sustainable forest management and planning. The similarities between the types of data addressed with LSTM algorithms and crown profile data make a compelling argument for the integration of deep learning into the crown profile modeling. Thus, the aim was to study the application of deep learning method LSTM and its variant algorithms in the crown profile modeling, using the crown profile database from Pinus yunnanensis secondary forests in Yunnan province, in southwest China. Furthermore, the SHAP (SHapley Additive exPlanations) was used to interpret the predictions of ensemble or deep learning models. The results showed that LSTM’s variant algorithms was competitive with traditional Vanila LSTM, but substantially outperformed ensemble learning model LightGBM. Specifically, the proposed Hybrid LSTM-LightGBM and Integrated LSTM-LightGBM have achieved a best forecasting performance on training set and testing set respectively. Furthermore, the feature importance analysis of LightGBM and Vanila LSTM presented that there were more factors that contribute significantly to Vanila LSTM model compared to LightGBM model. This phenomenon can explain why deep learning outperforms ensemble learning when there are more interrelated features. Frontiers Media S.A. 2023-02-03 /pmc/articles/PMC9936141/ /pubmed/36818871 http://dx.doi.org/10.3389/fpls.2023.1093905 Text en Copyright © 2023 Chen and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Chen, Yuling
Wang, Jianming
Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title_full Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title_fullStr Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title_full_unstemmed Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title_short Deep learning for crown profile modelling of Pinus yunnanensis secondary forests in Southwest China
title_sort deep learning for crown profile modelling of pinus yunnanensis secondary forests in southwest china
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936141/
https://www.ncbi.nlm.nih.gov/pubmed/36818871
http://dx.doi.org/10.3389/fpls.2023.1093905
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