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A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 342...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936314/ https://www.ncbi.nlm.nih.gov/pubmed/36817452 http://dx.doi.org/10.3389/fimmu.2023.1075848 |
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author | Su, Wei Hong, Ting Feng, Baijie Yang, Zhou Lei, Guang |
author_facet | Su, Wei Hong, Ting Feng, Baijie Yang, Zhou Lei, Guang |
author_sort | Su, Wei |
collection | PubMed |
description | Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 3429 RCD-associated genes in the TCGA database and depicted the genomic features and immune landscape of these clusters. Importantly, the clusters provided insights into recognizing tumor microenvironment (TME) and tumor responses to immunotherapy and chemotherapy. Further, we established and validated an RCD-Risk model based on RCD-associated genes, which strongly predicted the prognosis, TME, and immunotherapy outcomes in NSCLC patients. Notably, tissue microarray staining confirmed that the expression of LDLRAD3, a core gene in RCD-Risk model, correlated with poor survival. In conclusion, we developed a novel RCD classification system and RCD-Risk model of NSCLC, serving as a robust and promising predictor for prognosis and immunotherapy benefit of individual NSCLC patients. |
format | Online Article Text |
id | pubmed-9936314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99363142023-02-18 A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer Su, Wei Hong, Ting Feng, Baijie Yang, Zhou Lei, Guang Front Immunol Immunology Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 3429 RCD-associated genes in the TCGA database and depicted the genomic features and immune landscape of these clusters. Importantly, the clusters provided insights into recognizing tumor microenvironment (TME) and tumor responses to immunotherapy and chemotherapy. Further, we established and validated an RCD-Risk model based on RCD-associated genes, which strongly predicted the prognosis, TME, and immunotherapy outcomes in NSCLC patients. Notably, tissue microarray staining confirmed that the expression of LDLRAD3, a core gene in RCD-Risk model, correlated with poor survival. In conclusion, we developed a novel RCD classification system and RCD-Risk model of NSCLC, serving as a robust and promising predictor for prognosis and immunotherapy benefit of individual NSCLC patients. Frontiers Media S.A. 2023-02-03 /pmc/articles/PMC9936314/ /pubmed/36817452 http://dx.doi.org/10.3389/fimmu.2023.1075848 Text en Copyright © 2023 Su, Hong, Feng, Yang and Lei https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Su, Wei Hong, Ting Feng, Baijie Yang, Zhou Lei, Guang A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title | A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title_full | A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title_fullStr | A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title_full_unstemmed | A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title_short | A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
title_sort | unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936314/ https://www.ncbi.nlm.nih.gov/pubmed/36817452 http://dx.doi.org/10.3389/fimmu.2023.1075848 |
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