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A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer

Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 342...

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Autores principales: Su, Wei, Hong, Ting, Feng, Baijie, Yang, Zhou, Lei, Guang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936314/
https://www.ncbi.nlm.nih.gov/pubmed/36817452
http://dx.doi.org/10.3389/fimmu.2023.1075848
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author Su, Wei
Hong, Ting
Feng, Baijie
Yang, Zhou
Lei, Guang
author_facet Su, Wei
Hong, Ting
Feng, Baijie
Yang, Zhou
Lei, Guang
author_sort Su, Wei
collection PubMed
description Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 3429 RCD-associated genes in the TCGA database and depicted the genomic features and immune landscape of these clusters. Importantly, the clusters provided insights into recognizing tumor microenvironment (TME) and tumor responses to immunotherapy and chemotherapy. Further, we established and validated an RCD-Risk model based on RCD-associated genes, which strongly predicted the prognosis, TME, and immunotherapy outcomes in NSCLC patients. Notably, tissue microarray staining confirmed that the expression of LDLRAD3, a core gene in RCD-Risk model, correlated with poor survival. In conclusion, we developed a novel RCD classification system and RCD-Risk model of NSCLC, serving as a robust and promising predictor for prognosis and immunotherapy benefit of individual NSCLC patients.
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spelling pubmed-99363142023-02-18 A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer Su, Wei Hong, Ting Feng, Baijie Yang, Zhou Lei, Guang Front Immunol Immunology Regulated cell death (RCD) contributes to reshaping the tumor immune microenvironment and participating in the progression of non-small cell lung cancer (NSCLC); however, related mechanisms have not been fully disclosed. Here, we identified 5 subclusters of NSCLC based on consensus clustering of 3429 RCD-associated genes in the TCGA database and depicted the genomic features and immune landscape of these clusters. Importantly, the clusters provided insights into recognizing tumor microenvironment (TME) and tumor responses to immunotherapy and chemotherapy. Further, we established and validated an RCD-Risk model based on RCD-associated genes, which strongly predicted the prognosis, TME, and immunotherapy outcomes in NSCLC patients. Notably, tissue microarray staining confirmed that the expression of LDLRAD3, a core gene in RCD-Risk model, correlated with poor survival. In conclusion, we developed a novel RCD classification system and RCD-Risk model of NSCLC, serving as a robust and promising predictor for prognosis and immunotherapy benefit of individual NSCLC patients. Frontiers Media S.A. 2023-02-03 /pmc/articles/PMC9936314/ /pubmed/36817452 http://dx.doi.org/10.3389/fimmu.2023.1075848 Text en Copyright © 2023 Su, Hong, Feng, Yang and Lei https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Su, Wei
Hong, Ting
Feng, Baijie
Yang, Zhou
Lei, Guang
A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title_full A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title_fullStr A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title_full_unstemmed A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title_short A unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
title_sort unique regulated cell death-related classification regarding prognosis and immune landscapes in non-small cell lung cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936314/
https://www.ncbi.nlm.nih.gov/pubmed/36817452
http://dx.doi.org/10.3389/fimmu.2023.1075848
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