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Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9938542/ https://www.ncbi.nlm.nih.gov/pubmed/36820206 http://dx.doi.org/10.1515/biol-2022-0549 |
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author | Li, Huijun Wang, Xu Yang, Qing Cheng, Liming Zeng, Hao-Long |
author_facet | Li, Huijun Wang, Xu Yang, Qing Cheng, Liming Zeng, Hao-Long |
author_sort | Li, Huijun |
collection | PubMed |
description | Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic datasets from the GEO database. A total of 21 differentially expressed iron metabolism-related signatures were identified including 9 transporters, 8 enzymes, and 4 regulatory factors. Among them, lipocalin 2 was found to have the highest diagnostic value as its expression showed significant differences in all the comparisons including sepsis vs healthy controls, sepsis vs non-sepsis diseases, and mild forms vs severe forms of sepsis. Besides, the cytochrome P450 gene CYP1B1 also showed diagnostic values for sepsis from the non-sepsis diseases. The CYP4V2, LTF, and GCLM showed diagnostic values for distinguishing the severe forms from mild forms of sepsis. Our analysis identified 21 sepsis-associated iron metabolism-related genetic signatures, which may represent diagnostic and therapeutic biomarkers of sepsis, and will improve our understanding of the molecular mechanism underlying the occurrence of sepsis. |
format | Online Article Text |
id | pubmed-9938542 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-99385422023-02-19 Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis Li, Huijun Wang, Xu Yang, Qing Cheng, Liming Zeng, Hao-Long Open Life Sci Research Article Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic datasets from the GEO database. A total of 21 differentially expressed iron metabolism-related signatures were identified including 9 transporters, 8 enzymes, and 4 regulatory factors. Among them, lipocalin 2 was found to have the highest diagnostic value as its expression showed significant differences in all the comparisons including sepsis vs healthy controls, sepsis vs non-sepsis diseases, and mild forms vs severe forms of sepsis. Besides, the cytochrome P450 gene CYP1B1 also showed diagnostic values for sepsis from the non-sepsis diseases. The CYP4V2, LTF, and GCLM showed diagnostic values for distinguishing the severe forms from mild forms of sepsis. Our analysis identified 21 sepsis-associated iron metabolism-related genetic signatures, which may represent diagnostic and therapeutic biomarkers of sepsis, and will improve our understanding of the molecular mechanism underlying the occurrence of sepsis. De Gruyter 2023-02-09 /pmc/articles/PMC9938542/ /pubmed/36820206 http://dx.doi.org/10.1515/biol-2022-0549 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Li, Huijun Wang, Xu Yang, Qing Cheng, Liming Zeng, Hao-Long Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title | Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title_full | Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title_fullStr | Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title_full_unstemmed | Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title_short | Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
title_sort | identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9938542/ https://www.ncbi.nlm.nih.gov/pubmed/36820206 http://dx.doi.org/10.1515/biol-2022-0549 |
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