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Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis

Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic...

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Detalles Bibliográficos
Autores principales: Li, Huijun, Wang, Xu, Yang, Qing, Cheng, Liming, Zeng, Hao-Long
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9938542/
https://www.ncbi.nlm.nih.gov/pubmed/36820206
http://dx.doi.org/10.1515/biol-2022-0549
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author Li, Huijun
Wang, Xu
Yang, Qing
Cheng, Liming
Zeng, Hao-Long
author_facet Li, Huijun
Wang, Xu
Yang, Qing
Cheng, Liming
Zeng, Hao-Long
author_sort Li, Huijun
collection PubMed
description Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic datasets from the GEO database. A total of 21 differentially expressed iron metabolism-related signatures were identified including 9 transporters, 8 enzymes, and 4 regulatory factors. Among them, lipocalin 2 was found to have the highest diagnostic value as its expression showed significant differences in all the comparisons including sepsis vs healthy controls, sepsis vs non-sepsis diseases, and mild forms vs severe forms of sepsis. Besides, the cytochrome P450 gene CYP1B1 also showed diagnostic values for sepsis from the non-sepsis diseases. The CYP4V2, LTF, and GCLM showed diagnostic values for distinguishing the severe forms from mild forms of sepsis. Our analysis identified 21 sepsis-associated iron metabolism-related genetic signatures, which may represent diagnostic and therapeutic biomarkers of sepsis, and will improve our understanding of the molecular mechanism underlying the occurrence of sepsis.
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spelling pubmed-99385422023-02-19 Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis Li, Huijun Wang, Xu Yang, Qing Cheng, Liming Zeng, Hao-Long Open Life Sci Research Article Iron metabolism is considered to play the principal role in sepsis, but the key iron metabolism-related genetic signatures are unclear. In this study, we analyzed and identified the genetic signatures related to the iron-metabolism in sepsis by using a bioinformatics analysis of four transcriptomic datasets from the GEO database. A total of 21 differentially expressed iron metabolism-related signatures were identified including 9 transporters, 8 enzymes, and 4 regulatory factors. Among them, lipocalin 2 was found to have the highest diagnostic value as its expression showed significant differences in all the comparisons including sepsis vs healthy controls, sepsis vs non-sepsis diseases, and mild forms vs severe forms of sepsis. Besides, the cytochrome P450 gene CYP1B1 also showed diagnostic values for sepsis from the non-sepsis diseases. The CYP4V2, LTF, and GCLM showed diagnostic values for distinguishing the severe forms from mild forms of sepsis. Our analysis identified 21 sepsis-associated iron metabolism-related genetic signatures, which may represent diagnostic and therapeutic biomarkers of sepsis, and will improve our understanding of the molecular mechanism underlying the occurrence of sepsis. De Gruyter 2023-02-09 /pmc/articles/PMC9938542/ /pubmed/36820206 http://dx.doi.org/10.1515/biol-2022-0549 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Research Article
Li, Huijun
Wang, Xu
Yang, Qing
Cheng, Liming
Zeng, Hao-Long
Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title_full Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title_fullStr Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title_full_unstemmed Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title_short Identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
title_sort identification of iron metabolism-related genes as diagnostic signatures in sepsis by blood transcriptomic analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9938542/
https://www.ncbi.nlm.nih.gov/pubmed/36820206
http://dx.doi.org/10.1515/biol-2022-0549
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