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Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management

PURPOSE: Intracranial aneurysms are vascular deformations in the brain which are complicated to treat. In clinical routines, the risk assessment of intracranial aneurysm rupture is simplified and might be unreliable, especially for patients with multiple aneurysms. Clinical research proposed more ad...

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Autores principales: Niemann, Annika, Behme, Daniel, Larsen, Naomi, Preim, Bernhard, Saalfeld, Sylvia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939495/
https://www.ncbi.nlm.nih.gov/pubmed/36626087
http://dx.doi.org/10.1007/s11548-022-02818-6
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author Niemann, Annika
Behme, Daniel
Larsen, Naomi
Preim, Bernhard
Saalfeld, Sylvia
author_facet Niemann, Annika
Behme, Daniel
Larsen, Naomi
Preim, Bernhard
Saalfeld, Sylvia
author_sort Niemann, Annika
collection PubMed
description PURPOSE: Intracranial aneurysms are vascular deformations in the brain which are complicated to treat. In clinical routines, the risk assessment of intracranial aneurysm rupture is simplified and might be unreliable, especially for patients with multiple aneurysms. Clinical research proposed more advanced analysis of intracranial aneurysm, but requires many complex preprocessing steps. Advanced tools for automatic aneurysm analysis are needed to transfer current research into clinical routine. METHODS: We propose a pipeline for intracranial aneurysm analysis using deep learning-based mesh segmentation, automatic centerline and outlet detection and automatic generation of a semantic vessel graph. We use the semantic vessel graph for morphological analysis and an automatic rupture state classification. RESULTS: The deep learning-based mesh segmentation can be successfully applied to aneurysm surface meshes. With the subsequent semantic graph extraction, additional morphological parameters can be extracted that take the whole vascular domain into account. The vessels near ruptured aneurysms had a slightly higher average torsion and curvature compared to vessels near unruptured aneurysms. The 3D surface models can be further employed for rupture state classification which achieves an accuracy of 83.3%. CONCLUSION: The presented pipeline addresses several aspects of current research and can be used for aneurysm analysis with minimal user effort. The semantic graph representation with automatic separation of the aneurysm from the parent vessel is advantageous for morphological and hemodynamical parameter extraction and has great potential for deep learning-based rupture state classification.
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spelling pubmed-99394952023-02-21 Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management Niemann, Annika Behme, Daniel Larsen, Naomi Preim, Bernhard Saalfeld, Sylvia Int J Comput Assist Radiol Surg Original Article PURPOSE: Intracranial aneurysms are vascular deformations in the brain which are complicated to treat. In clinical routines, the risk assessment of intracranial aneurysm rupture is simplified and might be unreliable, especially for patients with multiple aneurysms. Clinical research proposed more advanced analysis of intracranial aneurysm, but requires many complex preprocessing steps. Advanced tools for automatic aneurysm analysis are needed to transfer current research into clinical routine. METHODS: We propose a pipeline for intracranial aneurysm analysis using deep learning-based mesh segmentation, automatic centerline and outlet detection and automatic generation of a semantic vessel graph. We use the semantic vessel graph for morphological analysis and an automatic rupture state classification. RESULTS: The deep learning-based mesh segmentation can be successfully applied to aneurysm surface meshes. With the subsequent semantic graph extraction, additional morphological parameters can be extracted that take the whole vascular domain into account. The vessels near ruptured aneurysms had a slightly higher average torsion and curvature compared to vessels near unruptured aneurysms. The 3D surface models can be further employed for rupture state classification which achieves an accuracy of 83.3%. CONCLUSION: The presented pipeline addresses several aspects of current research and can be used for aneurysm analysis with minimal user effort. The semantic graph representation with automatic separation of the aneurysm from the parent vessel is advantageous for morphological and hemodynamical parameter extraction and has great potential for deep learning-based rupture state classification. Springer International Publishing 2023-01-10 2023 /pmc/articles/PMC9939495/ /pubmed/36626087 http://dx.doi.org/10.1007/s11548-022-02818-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Niemann, Annika
Behme, Daniel
Larsen, Naomi
Preim, Bernhard
Saalfeld, Sylvia
Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title_full Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title_fullStr Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title_full_unstemmed Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title_short Deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
title_sort deep learning-based semantic vessel graph extraction for intracranial aneurysm rupture risk management
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939495/
https://www.ncbi.nlm.nih.gov/pubmed/36626087
http://dx.doi.org/10.1007/s11548-022-02818-6
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