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SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data

In this work we present SaFiDe, a deterministic method to detect eye movements (saccades and fixations) from eye-trace data. We developed this method for human and nonhuman primate data from video- and coil-recorded eye traces and further applied the algorithm to eye traces computed from electroocul...

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Autores principales: Madariaga, Samuel, Babul, Cecilia, Egaña, José Ignacio, Rubio-Venegas, Iván, Güney, Gamze, Concha-Miranda, Miguel, Maldonado, Pedro E, Devia, Christ
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939704/
https://www.ncbi.nlm.nih.gov/pubmed/36814691
http://dx.doi.org/10.1016/j.mex.2023.102041
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author Madariaga, Samuel
Babul, Cecilia
Egaña, José Ignacio
Rubio-Venegas, Iván
Güney, Gamze
Concha-Miranda, Miguel
Maldonado, Pedro E
Devia, Christ
author_facet Madariaga, Samuel
Babul, Cecilia
Egaña, José Ignacio
Rubio-Venegas, Iván
Güney, Gamze
Concha-Miranda, Miguel
Maldonado, Pedro E
Devia, Christ
author_sort Madariaga, Samuel
collection PubMed
description In this work we present SaFiDe, a deterministic method to detect eye movements (saccades and fixations) from eye-trace data. We developed this method for human and nonhuman primate data from video- and coil-recorded eye traces and further applied the algorithm to eye traces computed from electrooculograms. All the data analyzed were from free-exploration paradigms, where the main challenge was to detect periods of saccades and fixations that were uncued by the task. The method uses velocity and acceleration thresholds, calculated from the eye trace, to detect saccade and fixation periods. We show that our fully deterministic method detects saccades and fixations from eye traces during free visual exploration. The algorithm was implemented in MATLAB, and the code is publicly available on a GitHub repository. • The algorithm presented is entirely deterministic, simplifying the comparison between subjects and tasks. • Thus far, the algorithm presented can operate over video-based eye tracker data, human electrooculogram records, or monkey scleral eye coil data.
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spelling pubmed-99397042023-02-21 SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data Madariaga, Samuel Babul, Cecilia Egaña, José Ignacio Rubio-Venegas, Iván Güney, Gamze Concha-Miranda, Miguel Maldonado, Pedro E Devia, Christ MethodsX Neuroscience In this work we present SaFiDe, a deterministic method to detect eye movements (saccades and fixations) from eye-trace data. We developed this method for human and nonhuman primate data from video- and coil-recorded eye traces and further applied the algorithm to eye traces computed from electrooculograms. All the data analyzed were from free-exploration paradigms, where the main challenge was to detect periods of saccades and fixations that were uncued by the task. The method uses velocity and acceleration thresholds, calculated from the eye trace, to detect saccade and fixation periods. We show that our fully deterministic method detects saccades and fixations from eye traces during free visual exploration. The algorithm was implemented in MATLAB, and the code is publicly available on a GitHub repository. • The algorithm presented is entirely deterministic, simplifying the comparison between subjects and tasks. • Thus far, the algorithm presented can operate over video-based eye tracker data, human electrooculogram records, or monkey scleral eye coil data. Elsevier 2023-01-24 /pmc/articles/PMC9939704/ /pubmed/36814691 http://dx.doi.org/10.1016/j.mex.2023.102041 Text en © 2023 The Authors. Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Neuroscience
Madariaga, Samuel
Babul, Cecilia
Egaña, José Ignacio
Rubio-Venegas, Iván
Güney, Gamze
Concha-Miranda, Miguel
Maldonado, Pedro E
Devia, Christ
SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title_full SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title_fullStr SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title_full_unstemmed SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title_short SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
title_sort safide: detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939704/
https://www.ncbi.nlm.nih.gov/pubmed/36814691
http://dx.doi.org/10.1016/j.mex.2023.102041
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