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Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue
PURPOSE: Brown adipose tissue (BAT) can rapidly generate heat and improve energy metabolism. Circular RNAs (circRNAs) are cellular endogenous non-coding RNAs, which can regulate the development and progress of different diseases. However, the role of circRNAs in human BAT is not fully understood. He...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939945/ https://www.ncbi.nlm.nih.gov/pubmed/36814952 http://dx.doi.org/10.2147/DMSO.S398620 |
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author | Sun, Xiaoying Wan, Xinxing Khan, Md Asaduzzaman Zhang, Keke Yi, Xuan Wang, Zhouqi Chen, Ke |
author_facet | Sun, Xiaoying Wan, Xinxing Khan, Md Asaduzzaman Zhang, Keke Yi, Xuan Wang, Zhouqi Chen, Ke |
author_sort | Sun, Xiaoying |
collection | PubMed |
description | PURPOSE: Brown adipose tissue (BAT) can rapidly generate heat and improve energy metabolism. Circular RNAs (circRNAs) are cellular endogenous non-coding RNAs, which can regulate the development and progress of different diseases. However, the role of circRNAs in human BAT is not fully understood. Here, we analyzed the differentially expressed circRNAs (DECs) in human BAT, as well as in white adipose tissue (WAT), and identified new biomarkers of BAT. PATIENTS AND METHODS: Three human BAT and three human subcutaneous WAT samples were selected, and circRNA microarray was performed. Additionally, quantitative real-time polymerase chain reaction (qRT-PCR) was applied to determine the expression of six circRNAs. Finally, the functional analysis was performed by bioinformatics. RESULTS: Compared to WAT, 152 upregulated circRNAs and 201 downregulated circRNAs were identified in BAT. The DECs were further subjected to GO and KEGG enrichment analysis. Several circRNAs, for example, hsa_circ_0006168, hsa_circ_26337 and hsa_circ_0007507 were found upregulated and hsa_circ_0030162 was found downregulated in human BAT compared to WAT. CONCLUSION: This study profiles the circRNA expression in human BAT and WAT, and suggests hsa_circ_0006168, hsa_circ_26337, hsa_circ_0007507, and hsa_circ_0030162 as novel biomarkers for human BAT. |
format | Online Article Text |
id | pubmed-9939945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-99399452023-02-21 Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue Sun, Xiaoying Wan, Xinxing Khan, Md Asaduzzaman Zhang, Keke Yi, Xuan Wang, Zhouqi Chen, Ke Diabetes Metab Syndr Obes Original Research PURPOSE: Brown adipose tissue (BAT) can rapidly generate heat and improve energy metabolism. Circular RNAs (circRNAs) are cellular endogenous non-coding RNAs, which can regulate the development and progress of different diseases. However, the role of circRNAs in human BAT is not fully understood. Here, we analyzed the differentially expressed circRNAs (DECs) in human BAT, as well as in white adipose tissue (WAT), and identified new biomarkers of BAT. PATIENTS AND METHODS: Three human BAT and three human subcutaneous WAT samples were selected, and circRNA microarray was performed. Additionally, quantitative real-time polymerase chain reaction (qRT-PCR) was applied to determine the expression of six circRNAs. Finally, the functional analysis was performed by bioinformatics. RESULTS: Compared to WAT, 152 upregulated circRNAs and 201 downregulated circRNAs were identified in BAT. The DECs were further subjected to GO and KEGG enrichment analysis. Several circRNAs, for example, hsa_circ_0006168, hsa_circ_26337 and hsa_circ_0007507 were found upregulated and hsa_circ_0030162 was found downregulated in human BAT compared to WAT. CONCLUSION: This study profiles the circRNA expression in human BAT and WAT, and suggests hsa_circ_0006168, hsa_circ_26337, hsa_circ_0007507, and hsa_circ_0030162 as novel biomarkers for human BAT. Dove 2023-02-15 /pmc/articles/PMC9939945/ /pubmed/36814952 http://dx.doi.org/10.2147/DMSO.S398620 Text en © 2023 Sun et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Sun, Xiaoying Wan, Xinxing Khan, Md Asaduzzaman Zhang, Keke Yi, Xuan Wang, Zhouqi Chen, Ke Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title | Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title_full | Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title_fullStr | Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title_full_unstemmed | Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title_short | Comprehensive Analysis of circRNA Expression Profiles in Human Brown Adipose Tissue |
title_sort | comprehensive analysis of circrna expression profiles in human brown adipose tissue |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9939945/ https://www.ncbi.nlm.nih.gov/pubmed/36814952 http://dx.doi.org/10.2147/DMSO.S398620 |
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