Cargando…
LuxHMM: DNA methylation analysis with genome segmentation via hidden Markov model
BACKGROUND: DNA methylation plays an important role in studying the epigenetics of various biological processes including many diseases. Although differential methylation of individual cytosines can be informative, given that methylation of neighboring CpGs are typically correlated, analysis of diff...
Autores principales: | Malonzo, Maia H., Lähdesmäki, Harri |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9945676/ https://www.ncbi.nlm.nih.gov/pubmed/36810075 http://dx.doi.org/10.1186/s12859-023-05174-7 |
Ejemplares similares
-
LuxRep: a technical replicate-aware method for bisulfite sequencing data analysis
por: Malonzo, Maia H., et al.
Publicado: (2022) -
Hidden Markov model speed heuristic and iterative HMM search procedure
por: Johnson, L Steven, et al.
Publicado: (2010) -
LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation
por: Halla-aho, Viivi, et al.
Publicado: (2020) -
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
por: Waack, Stephan, et al.
Publicado: (2006) -
Efficient decoding algorithms for generalized hidden Markov model gene finders
por: Majoros, William H, et al.
Publicado: (2005)