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Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy
INTRODUCTION: Post-traumatic coagulopathy (PTC) is a critical pathology in traumatic brain injury (TBI), however, its potential mechanism is not clear. To explore this in peripheral samples, we integrated single cell RNA-sequencing and T cell repertoire (TCR)-sequencing across a cohort of patients w...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9946684/ https://www.ncbi.nlm.nih.gov/pubmed/36846021 http://dx.doi.org/10.3389/fimmu.2022.1095657 |
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author | Zheng, Ping Zhang, Ning Ren, Dabin Yu, Cong Zhao, Bin Bai, Qingke Zhang, Yisong Sun, Wanju |
author_facet | Zheng, Ping Zhang, Ning Ren, Dabin Yu, Cong Zhao, Bin Bai, Qingke Zhang, Yisong Sun, Wanju |
author_sort | Zheng, Ping |
collection | PubMed |
description | INTRODUCTION: Post-traumatic coagulopathy (PTC) is a critical pathology in traumatic brain injury (TBI), however, its potential mechanism is not clear. To explore this in peripheral samples, we integrated single cell RNA-sequencing and T cell repertoire (TCR)-sequencing across a cohort of patients with TBI. METHODS: Clinical samples from patients with more brain severity demonstrated overexpression of T cell receptor–encoding genes and less TCR diversity. RESULTS: By mapping TCR clonality, we found patients with PTC have less TCR clones, and the TCR clones are mainly distributed in cytotoxic effector CD8+T cell. In addition, the counts of CD8+ T cell and natural killer (NK) cells are associated with the coagulation parameter by WGCNA, and the granzyme and lectin-like receptor profiles are also decreased in the peripheral blood from TBI patients, suggesting that reduced peripheral CD8+ clonality and cytotoxic profiles may be involved in PTC after TBI. CONCLUSION: Our work systematically revealed the critical immune status in PTC patients at the single-cell level. |
format | Online Article Text |
id | pubmed-9946684 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99466842023-02-23 Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy Zheng, Ping Zhang, Ning Ren, Dabin Yu, Cong Zhao, Bin Bai, Qingke Zhang, Yisong Sun, Wanju Front Immunol Immunology INTRODUCTION: Post-traumatic coagulopathy (PTC) is a critical pathology in traumatic brain injury (TBI), however, its potential mechanism is not clear. To explore this in peripheral samples, we integrated single cell RNA-sequencing and T cell repertoire (TCR)-sequencing across a cohort of patients with TBI. METHODS: Clinical samples from patients with more brain severity demonstrated overexpression of T cell receptor–encoding genes and less TCR diversity. RESULTS: By mapping TCR clonality, we found patients with PTC have less TCR clones, and the TCR clones are mainly distributed in cytotoxic effector CD8+T cell. In addition, the counts of CD8+ T cell and natural killer (NK) cells are associated with the coagulation parameter by WGCNA, and the granzyme and lectin-like receptor profiles are also decreased in the peripheral blood from TBI patients, suggesting that reduced peripheral CD8+ clonality and cytotoxic profiles may be involved in PTC after TBI. CONCLUSION: Our work systematically revealed the critical immune status in PTC patients at the single-cell level. Frontiers Media S.A. 2023-02-08 /pmc/articles/PMC9946684/ /pubmed/36846021 http://dx.doi.org/10.3389/fimmu.2022.1095657 Text en Copyright © 2023 Zheng, Zhang, Ren, Yu, Zhao, Bai, Zhang and Sun https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Zheng, Ping Zhang, Ning Ren, Dabin Yu, Cong Zhao, Bin Bai, Qingke Zhang, Yisong Sun, Wanju Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title | Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title_full | Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title_fullStr | Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title_full_unstemmed | Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title_short | Integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
title_sort | integrated single-cell multiomics reveals novel immune candidate markers for post-traumatic coagulopathy |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9946684/ https://www.ncbi.nlm.nih.gov/pubmed/36846021 http://dx.doi.org/10.3389/fimmu.2022.1095657 |
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