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Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy

BACKGROUND: Deep learning tasks, which require large numbers of images, are widely applied in digital pathology. This poses challenges especially for supervised tasks since manual image annotation is an expensive and laborious process. This situation deteriorates even more in the case of a large var...

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Autores principales: Berijanian, Maryam, Schaadt, Nadine S., Huang, Boqiang, Lotz, Johannes, Feuerhake, Friedrich, Merhof, Dorit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9947329/
https://www.ncbi.nlm.nih.gov/pubmed/36844704
http://dx.doi.org/10.1016/j.jpi.2023.100195
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author Berijanian, Maryam
Schaadt, Nadine S.
Huang, Boqiang
Lotz, Johannes
Feuerhake, Friedrich
Merhof, Dorit
author_facet Berijanian, Maryam
Schaadt, Nadine S.
Huang, Boqiang
Lotz, Johannes
Feuerhake, Friedrich
Merhof, Dorit
author_sort Berijanian, Maryam
collection PubMed
description BACKGROUND: Deep learning tasks, which require large numbers of images, are widely applied in digital pathology. This poses challenges especially for supervised tasks since manual image annotation is an expensive and laborious process. This situation deteriorates even more in the case of a large variability of images. Coping with this problem requires methods such as image augmentation and synthetic image generation. In this regard, unsupervised stain translation via GANs has gained much attention recently, but a separate network must be trained for each pair of source and target domains. This work enables unsupervised many-to-many translation of histopathological stains with a single network while seeking to maintain the shape and structure of the tissues. METHODS: StarGAN-v2 is adapted for unsupervised many-to-many stain translation of histopathology images of breast tissues. An edge detector is incorporated to motivate the network to maintain the shape and structure of the tissues and to have an edge-preserving translation. Additionally, a subjective test is conducted on medical and technical experts in the field of digital pathology to evaluate the quality of generated images and to verify that they are indistinguishable from real images. As a proof of concept, breast cancer classifiers are trained with and without the generated images to quantify the effect of image augmentation using the synthetized images on classification accuracy. RESULTS: The results show that adding an edge detector helps to improve the quality of translated images and to preserve the general structure of tissues. Quality control and subjective tests on our medical and technical experts show that the real and artificial images cannot be distinguished, thereby confirming that the synthetic images are technically plausible. Moreover, this research shows that, by augmenting the training dataset with the outputs of the proposed stain translation method, the accuracy of breast cancer classifier with ResNet-50 and VGG-16 improves by 8.0% and 9.3%, respectively. CONCLUSIONS: This research indicates that a translation from an arbitrary source stain to other stains can be performed effectively within the proposed framework. The generated images are realistic and could be employed to train deep neural networks to improve their performance and cope with the problem of insufficient numbers of annotated images.
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spelling pubmed-99473292023-02-24 Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy Berijanian, Maryam Schaadt, Nadine S. Huang, Boqiang Lotz, Johannes Feuerhake, Friedrich Merhof, Dorit J Pathol Inform Original Research Article BACKGROUND: Deep learning tasks, which require large numbers of images, are widely applied in digital pathology. This poses challenges especially for supervised tasks since manual image annotation is an expensive and laborious process. This situation deteriorates even more in the case of a large variability of images. Coping with this problem requires methods such as image augmentation and synthetic image generation. In this regard, unsupervised stain translation via GANs has gained much attention recently, but a separate network must be trained for each pair of source and target domains. This work enables unsupervised many-to-many translation of histopathological stains with a single network while seeking to maintain the shape and structure of the tissues. METHODS: StarGAN-v2 is adapted for unsupervised many-to-many stain translation of histopathology images of breast tissues. An edge detector is incorporated to motivate the network to maintain the shape and structure of the tissues and to have an edge-preserving translation. Additionally, a subjective test is conducted on medical and technical experts in the field of digital pathology to evaluate the quality of generated images and to verify that they are indistinguishable from real images. As a proof of concept, breast cancer classifiers are trained with and without the generated images to quantify the effect of image augmentation using the synthetized images on classification accuracy. RESULTS: The results show that adding an edge detector helps to improve the quality of translated images and to preserve the general structure of tissues. Quality control and subjective tests on our medical and technical experts show that the real and artificial images cannot be distinguished, thereby confirming that the synthetic images are technically plausible. Moreover, this research shows that, by augmenting the training dataset with the outputs of the proposed stain translation method, the accuracy of breast cancer classifier with ResNet-50 and VGG-16 improves by 8.0% and 9.3%, respectively. CONCLUSIONS: This research indicates that a translation from an arbitrary source stain to other stains can be performed effectively within the proposed framework. The generated images are realistic and could be employed to train deep neural networks to improve their performance and cope with the problem of insufficient numbers of annotated images. Elsevier 2023-01-25 /pmc/articles/PMC9947329/ /pubmed/36844704 http://dx.doi.org/10.1016/j.jpi.2023.100195 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research Article
Berijanian, Maryam
Schaadt, Nadine S.
Huang, Boqiang
Lotz, Johannes
Feuerhake, Friedrich
Merhof, Dorit
Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title_full Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title_fullStr Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title_full_unstemmed Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title_short Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
title_sort unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9947329/
https://www.ncbi.nlm.nih.gov/pubmed/36844704
http://dx.doi.org/10.1016/j.jpi.2023.100195
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