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Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance
The detection and analysis of circulating tumor cells (CTCs) would be of aid in a precise cancer diagnosis and an efficient prognosis assessment. However, traditional methods that rely heavily on the isolation of CTCs based on their physical or biological features suffer from intensive labor, thus b...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9947588/ https://www.ncbi.nlm.nih.gov/pubmed/36845198 http://dx.doi.org/10.3389/fbioe.2023.1013107 |
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author | Li, Xiaolei Chen, Mingcan Xu, Jingjing Wu, Dihang Ye, Mengxue Wang, Chi Liu, Wanyu |
author_facet | Li, Xiaolei Chen, Mingcan Xu, Jingjing Wu, Dihang Ye, Mengxue Wang, Chi Liu, Wanyu |
author_sort | Li, Xiaolei |
collection | PubMed |
description | The detection and analysis of circulating tumor cells (CTCs) would be of aid in a precise cancer diagnosis and an efficient prognosis assessment. However, traditional methods that rely heavily on the isolation of CTCs based on their physical or biological features suffer from intensive labor, thus being unsuitable for rapid detection. Furthermore, currently available intelligent methods are short of interpretability, which creates a lot of uncertainty during diagnosis. Therefore, we propose here an automated method that takes advantage of bright-field microscopic images with high resolution, so as to take an insight into cell patterns. Specifically, the precise identification of CTCs was achieved by using an optimized single-shot multi-box detector (SSD)–based neural network with integrated attention mechanism and feature fusion modules. Compared to the conventional SSD system, our method exhibited a superior detection performance with the recall rate of 92.2%, and the maximum average precision (AP) value of 97.9%. To note, the optimal SSD-based neural network was combined with advanced visualization technology, i.e., the gradient-weighted class activation mapping (Grad-CAM) for model interpretation, and the t-distributed stochastic neighbor embedding (T-SNE) for data visualization. Our work demonstrates for the first time the outstanding performance of SSD-based neural network for CTCs identification in human peripheral blood environment, showing great potential for the early detection and continuous monitoring of cancer progression. |
format | Online Article Text |
id | pubmed-9947588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99475882023-02-24 Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance Li, Xiaolei Chen, Mingcan Xu, Jingjing Wu, Dihang Ye, Mengxue Wang, Chi Liu, Wanyu Front Bioeng Biotechnol Bioengineering and Biotechnology The detection and analysis of circulating tumor cells (CTCs) would be of aid in a precise cancer diagnosis and an efficient prognosis assessment. However, traditional methods that rely heavily on the isolation of CTCs based on their physical or biological features suffer from intensive labor, thus being unsuitable for rapid detection. Furthermore, currently available intelligent methods are short of interpretability, which creates a lot of uncertainty during diagnosis. Therefore, we propose here an automated method that takes advantage of bright-field microscopic images with high resolution, so as to take an insight into cell patterns. Specifically, the precise identification of CTCs was achieved by using an optimized single-shot multi-box detector (SSD)–based neural network with integrated attention mechanism and feature fusion modules. Compared to the conventional SSD system, our method exhibited a superior detection performance with the recall rate of 92.2%, and the maximum average precision (AP) value of 97.9%. To note, the optimal SSD-based neural network was combined with advanced visualization technology, i.e., the gradient-weighted class activation mapping (Grad-CAM) for model interpretation, and the t-distributed stochastic neighbor embedding (T-SNE) for data visualization. Our work demonstrates for the first time the outstanding performance of SSD-based neural network for CTCs identification in human peripheral blood environment, showing great potential for the early detection and continuous monitoring of cancer progression. Frontiers Media S.A. 2023-02-09 /pmc/articles/PMC9947588/ /pubmed/36845198 http://dx.doi.org/10.3389/fbioe.2023.1013107 Text en Copyright © 2023 Li, Chen, Xu, Wu, Ye, Wang and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Li, Xiaolei Chen, Mingcan Xu, Jingjing Wu, Dihang Ye, Mengxue Wang, Chi Liu, Wanyu Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title | Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title_full | Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title_fullStr | Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title_full_unstemmed | Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title_short | Interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
title_sort | interpretatively automated identification of circulating tumor cells from human peripheral blood with high performance |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9947588/ https://www.ncbi.nlm.nih.gov/pubmed/36845198 http://dx.doi.org/10.3389/fbioe.2023.1013107 |
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