Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast

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BACKGROUND: Many computational methods have been developed to detect non-reference transposable element (TE) insertions using short-read whole genome sequencing data. The diversity and complexity of such methods often present challenges to new users seeking to reproducibly install, execute or evalua...

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Detalles Bibliográficos
Autores principales: Chen, Jingxuan, Basting, Preston J., Han, Shunhua, Garfinkel, David J., Bergman, Casey M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9948991/
https://www.ncbi.nlm.nih.gov/pubmed/36824955
http://dx.doi.org/10.1101/2023.02.13.528343
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