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Community-developed checklists for publishing images and image analyses

Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified gu...

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Autores principales: Schmied, Christopher, Nelson, Michael S., Avilov, Sergiy, Bakker, Gert-Jan, Bertocchi, Cristina, Bischof, Johanna, Boehm, Ulrike, Brocher, Jan, Carvalho, Mariana, Chiritescu, Catalin, Christopher, Jana, Cimini, Beth A., Conde-Sousa, Eduardo, Ebner, Michael, Ecker, Rupert, Eliceiri, Kevin, Fernandez-Rodriguez, Julia, Gaudreault, Nathalie, Gelman, Laurent, Grunwald, David, Gu, Tingting, Halidi, Nadia, Hammer, Mathias, Hartley, Matthew, Held, Marie, Jug, Florian, Kapoor, Varun, Koksoy, Ayse Aslihan, Lacoste, Judith, Dévédec, Sylvia Le, Guyader, Sylvie Le, Liu, Penghuan, Martins, Gabriel G., Mathur, Aastha, Miura, Kota, Montero Llopis, Paula, Nitschke, Roland, North, Alison, Parslow, Adam C., Payne-Dwyer, Alex, Plantard, Laure, Ali, Rizwan, Schroth-Diez, Britta, Schütz, Lucas, Scott, Ryan T., Seitz, Arne, Selchow, Olaf, Sharma, Ved P., Spitaler, Martin, Srinivasan, Sathya, Strambio-De-Castillia, Caterina, Taatjes, Douglas, Tischer, Christian, Jambor, Helena Klara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9949169/
https://www.ncbi.nlm.nih.gov/pubmed/36824427
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author Schmied, Christopher
Nelson, Michael S.
Avilov, Sergiy
Bakker, Gert-Jan
Bertocchi, Cristina
Bischof, Johanna
Boehm, Ulrike
Brocher, Jan
Carvalho, Mariana
Chiritescu, Catalin
Christopher, Jana
Cimini, Beth A.
Conde-Sousa, Eduardo
Ebner, Michael
Ecker, Rupert
Eliceiri, Kevin
Fernandez-Rodriguez, Julia
Gaudreault, Nathalie
Gelman, Laurent
Grunwald, David
Gu, Tingting
Halidi, Nadia
Hammer, Mathias
Hartley, Matthew
Held, Marie
Jug, Florian
Kapoor, Varun
Koksoy, Ayse Aslihan
Lacoste, Judith
Dévédec, Sylvia Le
Guyader, Sylvie Le
Liu, Penghuan
Martins, Gabriel G.
Mathur, Aastha
Miura, Kota
Montero Llopis, Paula
Nitschke, Roland
North, Alison
Parslow, Adam C.
Payne-Dwyer, Alex
Plantard, Laure
Ali, Rizwan
Schroth-Diez, Britta
Schütz, Lucas
Scott, Ryan T.
Seitz, Arne
Selchow, Olaf
Sharma, Ved P.
Spitaler, Martin
Srinivasan, Sathya
Strambio-De-Castillia, Caterina
Taatjes, Douglas
Tischer, Christian
Jambor, Helena Klara
author_facet Schmied, Christopher
Nelson, Michael S.
Avilov, Sergiy
Bakker, Gert-Jan
Bertocchi, Cristina
Bischof, Johanna
Boehm, Ulrike
Brocher, Jan
Carvalho, Mariana
Chiritescu, Catalin
Christopher, Jana
Cimini, Beth A.
Conde-Sousa, Eduardo
Ebner, Michael
Ecker, Rupert
Eliceiri, Kevin
Fernandez-Rodriguez, Julia
Gaudreault, Nathalie
Gelman, Laurent
Grunwald, David
Gu, Tingting
Halidi, Nadia
Hammer, Mathias
Hartley, Matthew
Held, Marie
Jug, Florian
Kapoor, Varun
Koksoy, Ayse Aslihan
Lacoste, Judith
Dévédec, Sylvia Le
Guyader, Sylvie Le
Liu, Penghuan
Martins, Gabriel G.
Mathur, Aastha
Miura, Kota
Montero Llopis, Paula
Nitschke, Roland
North, Alison
Parslow, Adam C.
Payne-Dwyer, Alex
Plantard, Laure
Ali, Rizwan
Schroth-Diez, Britta
Schütz, Lucas
Scott, Ryan T.
Seitz, Arne
Selchow, Olaf
Sharma, Ved P.
Spitaler, Martin
Srinivasan, Sathya
Strambio-De-Castillia, Caterina
Taatjes, Douglas
Tischer, Christian
Jambor, Helena Klara
author_sort Schmied, Christopher
collection PubMed
description Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified guidelines. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here we present community-developed checklists for preparing light microscopy images and image analysis for publications. These checklists offer authors, readers, and publishers key recommendations for image formatting and annotation, color selection, data availability, and for reporting image analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby heighten the quality and explanatory power of microscopy data is in publications.
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spelling pubmed-99491692023-02-24 Community-developed checklists for publishing images and image analyses Schmied, Christopher Nelson, Michael S. Avilov, Sergiy Bakker, Gert-Jan Bertocchi, Cristina Bischof, Johanna Boehm, Ulrike Brocher, Jan Carvalho, Mariana Chiritescu, Catalin Christopher, Jana Cimini, Beth A. Conde-Sousa, Eduardo Ebner, Michael Ecker, Rupert Eliceiri, Kevin Fernandez-Rodriguez, Julia Gaudreault, Nathalie Gelman, Laurent Grunwald, David Gu, Tingting Halidi, Nadia Hammer, Mathias Hartley, Matthew Held, Marie Jug, Florian Kapoor, Varun Koksoy, Ayse Aslihan Lacoste, Judith Dévédec, Sylvia Le Guyader, Sylvie Le Liu, Penghuan Martins, Gabriel G. Mathur, Aastha Miura, Kota Montero Llopis, Paula Nitschke, Roland North, Alison Parslow, Adam C. Payne-Dwyer, Alex Plantard, Laure Ali, Rizwan Schroth-Diez, Britta Schütz, Lucas Scott, Ryan T. Seitz, Arne Selchow, Olaf Sharma, Ved P. Spitaler, Martin Srinivasan, Sathya Strambio-De-Castillia, Caterina Taatjes, Douglas Tischer, Christian Jambor, Helena Klara ArXiv Article Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image analyses results, there are to date no unified guidelines. Consequently, microscopy images and image data in publications may be unclear or difficult to interpret. Here we present community-developed checklists for preparing light microscopy images and image analysis for publications. These checklists offer authors, readers, and publishers key recommendations for image formatting and annotation, color selection, data availability, and for reporting image analysis workflows. The goal of our guidelines is to increase the clarity and reproducibility of image figures and thereby heighten the quality and explanatory power of microscopy data is in publications. Cornell University 2023-09-14 /pmc/articles/PMC9949169/ /pubmed/36824427 Text en https://creativecommons.org/licenses/by-sa/4.0/This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License (https://creativecommons.org/licenses/by-sa/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. If you remix, adapt, or build upon the material, you must license the modified material under identical terms.
spellingShingle Article
Schmied, Christopher
Nelson, Michael S.
Avilov, Sergiy
Bakker, Gert-Jan
Bertocchi, Cristina
Bischof, Johanna
Boehm, Ulrike
Brocher, Jan
Carvalho, Mariana
Chiritescu, Catalin
Christopher, Jana
Cimini, Beth A.
Conde-Sousa, Eduardo
Ebner, Michael
Ecker, Rupert
Eliceiri, Kevin
Fernandez-Rodriguez, Julia
Gaudreault, Nathalie
Gelman, Laurent
Grunwald, David
Gu, Tingting
Halidi, Nadia
Hammer, Mathias
Hartley, Matthew
Held, Marie
Jug, Florian
Kapoor, Varun
Koksoy, Ayse Aslihan
Lacoste, Judith
Dévédec, Sylvia Le
Guyader, Sylvie Le
Liu, Penghuan
Martins, Gabriel G.
Mathur, Aastha
Miura, Kota
Montero Llopis, Paula
Nitschke, Roland
North, Alison
Parslow, Adam C.
Payne-Dwyer, Alex
Plantard, Laure
Ali, Rizwan
Schroth-Diez, Britta
Schütz, Lucas
Scott, Ryan T.
Seitz, Arne
Selchow, Olaf
Sharma, Ved P.
Spitaler, Martin
Srinivasan, Sathya
Strambio-De-Castillia, Caterina
Taatjes, Douglas
Tischer, Christian
Jambor, Helena Klara
Community-developed checklists for publishing images and image analyses
title Community-developed checklists for publishing images and image analyses
title_full Community-developed checklists for publishing images and image analyses
title_fullStr Community-developed checklists for publishing images and image analyses
title_full_unstemmed Community-developed checklists for publishing images and image analyses
title_short Community-developed checklists for publishing images and image analyses
title_sort community-developed checklists for publishing images and image analyses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9949169/
https://www.ncbi.nlm.nih.gov/pubmed/36824427
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