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Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time

A fundamental operation in computational genomics is to reduce the input sequences to their constituent k-mers. For maximum performance of downstream applications it is important to store the k-mers in small space, while keeping the representation easy and efficient to use (i.e. without k-mer repeti...

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Detalles Bibliográficos
Autores principales: Schmidt, Sebastian, Alanko, Jarno N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Journal Experts 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9949180/
https://www.ncbi.nlm.nih.gov/pubmed/36824947
http://dx.doi.org/10.21203/rs.3.rs-2581995/v1