Cargando…

Transcript annotation of Chinese sturgeon (Acipenser sinensis) using Iso-seq and RNA-seq data

Chinese sturgeon (Acipenser sinensis) is a critically endangered fish inhabiting the Yangtze River and Chinese coastal waters. Numerous research projects and conservation efforts have focused on artificial propagation and release to restore this endangered species. However, genomic and full-length t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liao, Xiaolin, Zhang, Libin, Tian, Hua, Yang, Bo, Wang, Ezhou, Zhu, Bin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Data Descriptor
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9950146/ https://www.ncbi.nlm.nih.gov/pubmed/36823216 http://dx.doi.org/10.1038/s41597-023-02014-4

Ejemplares similares

Hypothalamus-pituitary-gonad axis transcriptome profiling for sex differentiation in Acipenser sinensis
por: Du, Hejun, et al.
Publicado: (2019)

Effects of feeding frequency on juvenile Chinese sturgeon Acipenser sinensis
por: Hu, Yacheng, et al.
Publicado: (2020)

Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis)
por: Yue, Huamei, et al.
Publicado: (2015)

Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming
por: Du, Zhonghua, et al.
Publicado: (2018)

Development and characterization of a duplex PCR assay in Chinese sturgeon (Acipenser sinensis) for genetic analysis
por: Hu, Yacheng, et al.
Publicado: (2020)

An ATAC-seq atlas of chromatin accessibility in mouse tissues
por: Liu, Chuanyu, et al.
Publicado: (2019)

Optimization of the flow conditions in the spawning ground of the Chinese sturgeon (Acipenser sinensis) through Gezhouba Dam generating units
por: Huang, Anyang, et al.
Publicado: (2021)

Comprehensive RNA-seq transcriptomic profiling in the malignant progression of gliomas
por: Zhao, Zheng, et al.
Publicado: (2017)

Genomics and transcriptomics of the Chinese mitten crabs (Eriocheir sinensis)
por: Yang, Nan, et al.
Publicado: (2023)

Genome-wide identification of accessible chromatin regions by ATAC-seq upon induction of the transcription factor bZIP11 in Arabidopsis
por: Hellens, Alicia M., et al.
Publicado: (2023)

Using environmental DNA methods to improve detectability in an endangered sturgeon (Acipenser sinensis) monitoring program
por: Yu, Dan, et al.
Publicado: (2021)

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
por: Orsini, Luisa, et al.
Publicado: (2016)

An RNA-Seq atlas of gene expression in mouse and rat normal tissues
por: Söllner, Julia F., et al.
Publicado: (2017)

Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq
por: Zhao, Xiaomeng, et al.
Publicado: (2020)

RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells
por: Barta, Cody L., et al.
Publicado: (2018)

RNA-seq transcriptomic profiling of crassulacean acid metabolism pathway in Dendrobium catenatum
por: Zou, Long-Hai, et al.
Publicado: (2018)

Polysome profiling followed by RNA-seq of cardiac differentiation stages in hESCs
por: Pereira, Isabela Tiemy, et al.
Publicado: (2018)

Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome
por: Suárez-Vega, Aroa, et al.
Publicado: (2016)

Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophy
por: Ehmsen, Jeffrey T., et al.
Publicado: (2019)

RNA-seq profiling of white and brown adipocyte differentiation treated with epigallocatechin gallate
por: Zhang, Pengpeng, et al.
Publicado: (2022)

An RNA-seq time series of the medaka pituitary gland during sexual maturation
por: Ager-Wick, Eirill, et al.
Publicado: (2023)

A scATAC-seq atlas of chromatin accessibility in axolotl brain regions
por: Feng, Weimin, et al.
Publicado: (2023)

A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis
por: Yang, Xuchen, et al.
Publicado: (2019)

Embryonic Development and Survival of Siberian Sturgeon × Russian Sturgeon (Acipenser baerii × Acipenser gueldenstaedtii) Hybrids Cultured in a RAS System
por: Fopp-Bayat, Dorota, et al.
Publicado: (2022)

Long non-coding RNA and circular RNA and coding RNA profiling of plasma exosomes of osteosarcoma by RNA seq
por: Liu, Yun, et al.
Publicado: (2023)

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq
por: Gong, Binsheng, et al.
Publicado: (2014)

Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq
por: Xu, Joshua, et al.
Publicado: (2014)

Single-cell RNA-seq of cultured human adipose-derived mesenchymal stem cells
por: Liu, Xuanyu, et al.
Publicado: (2019)

RNA-seq of macrophages of amoeboid or mesenchymal migratory phenotype due to specific structure of environment
por: Čermák, Vladimír, et al.
Publicado: (2018)

RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
por: Zucca, Susanna, et al.
Publicado: (2019)

Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
por: Tokuda, Yuichi, et al.
Publicado: (2020)

RNA-seq of peripheral blood mononuclear cells of congenital generalized lipodystrophy type 2 patients
por: Huang, Yen-Hua, et al.
Publicado: (2021)

A proteomic and RNA-seq transcriptomic dataset of capsaicin-aggravated mouse chronic colitis model
por: Chen, Kexin, et al.
Publicado: (2022)

Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich’s ataxia patients
por: Seco-Cervera, Marta, et al.
Publicado: (2018)

Characterization of hormone-producing cell types in the teleost pituitary gland using single-cell RNA-seq
por: Siddique, Khadeeja, et al.
Publicado: (2021)

Single-cell RNA-seq of primary bone marrow neutrophils from female and male adult mice
por: Kim, Minhoo, et al.
Publicado: (2022)

The complete mitochondrial genome of Dabry’s sturgeon (Acipenser dabryanus)
por: Liu, Juanjuan, et al.
Publicado: (2017)

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data
por: Beiki, H., et al.
Publicado: (2019)

RNA-Seq analysis and de novo transcriptome assembly of Cry toxin susceptible and tolerant Achaea janata larvae
por: Dhania, Narender K., et al.
Publicado: (2019)

Long non-coding and coding RNA profiling using strand-specific RNA-seq in human hypertrophic cardiomyopathy
por: Liu, Xuanyu, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_ml5malftrn5i5lrjk6r0takigt