Cargando…

Preparing a database of corrected protein structures important in cell signaling pathways

BACKGROUND AND PURPOSE: Precise structures of macromolecules are important for structure-based drug design. Due to the limited resolution of some structures obtained from X-ray diffraction crystallography, differentiation between the NH and O atoms can be difficult. Sometimes a number of amino acids...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hatami, Samaneh, Sirous, Hajar, Mahnam, Karim, Najafipour, Aylar, Fassihi, Afshin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Wolters Kluwer - Medknow 2022
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9951780/ https://www.ncbi.nlm.nih.gov/pubmed/36846730 http://dx.doi.org/10.4103/1735-5362.363597

Ejemplares similares

In vitro and in silico studies of the inhibitory effects of some novel kojic acid derivatives on tyrosinase enzyme
por: Asadzadeh, Azizeh, et al.
Publicado: (2016)

Identification of Novel 3-Hydroxy-pyran-4-One Derivatives as Potent HIV-1 Integrase Inhibitors Using in silico Structure-Based Combinatorial Library Design Approach
por: Sirous, Hajar, et al.
Publicado: (2019)

Design of a novel metal binding peptide by molecular dynamics simulation to sequester Cu and Zn ions
por: Mahnam, K., et al.
Publicado: (2014)

QSAR Study of p56(lck) Protein Tyrosine Kinase Inhibitory Activity of Flavonoid Derivatives Using MLR and GA-PLS
por: Fassihi, Afshin, et al.
Publicado: (2008)

QSAR Study of Antimicrobial 3-Hydroxypyridine-4-one and 3-Hydroxypyran-4-one Derivatives Using Different Chemometric Tools
por: Sabet, Razieh, et al.
Publicado: (2008)

Molecular detection of infectious bronchitis and Newcastle disease viruses in broiler chickens with respiratory signs using Duplex RT-PCR
por: Saba Shirvan, Aylar, et al.
Publicado: (2014)

Computational comparison of two new fusion proteins for multiple sclerosis
por: Payab, Nasrin, et al.
Publicado: (2018)

Molecular Dynamics and Docking Investigations of Several Zoanthamine-Type Marine Alkaloids as Matrix Metaloproteinase-1 Inhibitors
por: Farrokhnia, Maryam, et al.
Publicado: (2017)

Relationship between spiritual health, resilience, and happiness among a group of dental students: a cross-sectional study with structural equation modeling method
por: Hatami, Saeed, et al.
Publicado: (2022)

Reteplase: Structure, Function, and Production
por: Mohammadi, Elmira, et al.
Publicado: (2019)

Examining the interactions scorpion venom peptides (HP1090, Meucin-13, and Meucin-18) with the receptor binding domain of the coronavirus spike protein to design a mutated therapeutic peptide
por: Mahnam, Karim, et al.
Publicado: (2021)

A GU-Net-Based Architecture Predicting Ligand–Protein-Binding Atoms
por: Nazem, Fatemeh, et al.
Publicado: (2023)

INOH: ontology-based highly structured database of signal transduction pathways
por: Yamamoto, Satoko, et al.
Publicado: (2011)

What hematological and endocrinal indicators are important in COVID-19 infection?
por: Ostadrahimi, Alireza, et al.
Publicado: (2022)

Expression analysis of HIF-3α as a potent prognostic biomarker in various types of human cancers: a case of meta-analysis
por: Yazdani, Behnaz, et al.
Publicado: (2022)

Data Import and Validation in the Inorganic Crystal Structure Database
por: Behrens, H.
Publicado: (1996)

A study on the anti-inflammatory effects of new derivatives of 3-hydroxy pyridine-4-one
por: Hajhashemi, Valiollah, et al.
Publicado: (2014)

Discovery of novel RARα agonists using pharmacophore-based virtual screening, molecular docking, and molecular dynamics simulation studies
por: Ghorayshian, Atefeh, et al.
Publicado: (2023)

Correction to: Evaluation of the importance of mixing during preparation of antibiotic infusions
por: Barzel, Ina, et al.
Publicado: (2022)

Synthesis and antileishmanial activity of antimony (V) complexes of hydroxypyranone and hydroxypyridinone ligands
por: Sheikhmoradi, Vafa, et al.
Publicado: (2018)

Interleukins and their signaling pathways in the Reactome biological pathway database
por: Jupe, Steve, et al.
Publicado: (2018)

Design and molecular dynamic simulation of a new double-epitope tolerogenic protein as a potential vaccine for multiple sclerosis disease
por: Banisharif-Dehkordi, Fatemeh, et al.
Publicado: (2019)

IsomiR-eQTL: A Cancer-Specific Expression Quantitative Trait Loci Database of miRNAs and Their Isoforms
por: Moradi, Afshin, et al.
Publicado: (2022)

FireDB—a database of functionally important residues from proteins of known structure
por: Lopez, Gonzalo, et al.
Publicado: (2007)

Synthesis and evaluation of antioxidant activity of some novel hydroxypyridinone derivatives: a DFT approach for explanation of their radical scavenging activity
por: Fassihi, Afshin, et al.
Publicado: (2020)

Theoretical design of a new chimeric protein for the treatment of breast cancer
por: Soleimani, Meysam, et al.
Publicado: (2016)

The Effect of Needle Type, Duration of Surgery and Position of the Patient on the Risk of Transient Neurologic Symptoms
por: Etezadi, Farhad, et al.
Publicado: (2013)

Silver-coated textiles in hidradenitis suppurativa: A case report
por: Morand, Meggie, et al.
Publicado: (2019)

The roles of signaling pathways in SARS-CoV-2 infection; lessons learned from SARS-CoV and MERS-CoV
por: Hemmat, Nima, et al.
Publicado: (2021)

Important Databases Related to Genomes
por: Chaitanya, K. V.
Publicado: (2019)

XTalkDB: a database of signaling pathway crosstalk
por: Sam, Sarah A., et al.
Publicado: (2017)

Quantitative structure activities relationships of some 2-mercaptoimidazoles as CCR2 inhibitors using genetic algorithm-artificial neural networks
por: Saghaie, L, et al.
Publicado: (2013)

Disruption of Irisin Dimerization by FDA-Approved Drugs: A Computational Repurposing Approach for the Potential Treatment of Lipodystrophy Syndromes
por: Flori, Lorenzo, et al.
Publicado: (2023)

Importance of Water and Water-Borne Diseases: On the Occasion of the World Water Day (March 22, 2013)
por: Hatami, Hossein
Publicado: (2013)

In silico screening and molecular dynamics simulations toward new human papillomavirus 16 type inhibitors
por: Razzaghi-Asl, Nima, et al.
Publicado: (2022)

IntPath--an integrated pathway gene relationship database for model organisms and important pathogens
por: Zhou, Hufeng, et al.
Publicado: (2012)

The Important Role of Protein Kinases in the p53 Sestrin Signaling Pathway
por: Gülow, Karsten, et al.
Publicado: (2023)

In silico interaction of insulin-like growth factor binding protein 3 with insulin-like growth factor 1
por: Jafari, Elham, et al.
Publicado: (2018)

Novel approach for low‐dose pulmonary delivery of hydroxychloroquine in COVID‐19
por: Fassihi, Safa C., et al.
Publicado: (2020)

SKPDB: a structural database of shikimate pathway enzymes
por: Arcuri, Helen A, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_sqs7ge78rmou9c57ddkn7ucr0d