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Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells

Sediment microbial fuel cells (MFCs) were developed in which the complex substrates present in the sediment could be oxidized by microbes for electron production. In this study, the functional prediction of microbial communities of anode-associated soils in sediment MFCs was investigated based on 16...

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Autores principales: Kuo, Jimmy, Liu, Daniel, Lin, Chorng-Horng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9951962/
https://www.ncbi.nlm.nih.gov/pubmed/36829693
http://dx.doi.org/10.3390/bioengineering10020199
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author Kuo, Jimmy
Liu, Daniel
Lin, Chorng-Horng
author_facet Kuo, Jimmy
Liu, Daniel
Lin, Chorng-Horng
author_sort Kuo, Jimmy
collection PubMed
description Sediment microbial fuel cells (MFCs) were developed in which the complex substrates present in the sediment could be oxidized by microbes for electron production. In this study, the functional prediction of microbial communities of anode-associated soils in sediment MFCs was investigated based on 16S rRNA genes. Four computational approaches, including BugBase, Functional Annotation of Prokaryotic Taxa (FAPROTAX), the Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt2), and Tax4Fun2, were applied. A total of 67, 9, 37, and 38 functional features were statistically significant. Among these functional groups, the function related to the generation of precursor metabolites and energy was the only one included in all four computational methods, and the sum total of the proportion was 93.54%. The metabolism of cofactor, carrier, and vitamin biosynthesis was included in the three methods, and the sum total of the proportion was 29.94%. The results suggested that the microbial communities usually contribute to energy metabolism, or the metabolism of cofactor, carrier, and vitamin biosynthesis might reveal the functional status in the anode of sediment MFCs.
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spelling pubmed-99519622023-02-25 Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells Kuo, Jimmy Liu, Daniel Lin, Chorng-Horng Bioengineering (Basel) Article Sediment microbial fuel cells (MFCs) were developed in which the complex substrates present in the sediment could be oxidized by microbes for electron production. In this study, the functional prediction of microbial communities of anode-associated soils in sediment MFCs was investigated based on 16S rRNA genes. Four computational approaches, including BugBase, Functional Annotation of Prokaryotic Taxa (FAPROTAX), the Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt2), and Tax4Fun2, were applied. A total of 67, 9, 37, and 38 functional features were statistically significant. Among these functional groups, the function related to the generation of precursor metabolites and energy was the only one included in all four computational methods, and the sum total of the proportion was 93.54%. The metabolism of cofactor, carrier, and vitamin biosynthesis was included in the three methods, and the sum total of the proportion was 29.94%. The results suggested that the microbial communities usually contribute to energy metabolism, or the metabolism of cofactor, carrier, and vitamin biosynthesis might reveal the functional status in the anode of sediment MFCs. MDPI 2023-02-03 /pmc/articles/PMC9951962/ /pubmed/36829693 http://dx.doi.org/10.3390/bioengineering10020199 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kuo, Jimmy
Liu, Daniel
Lin, Chorng-Horng
Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title_full Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title_fullStr Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title_full_unstemmed Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title_short Functional Prediction of Microbial Communities in Sediment Microbial Fuel Cells
title_sort functional prediction of microbial communities in sediment microbial fuel cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9951962/
https://www.ncbi.nlm.nih.gov/pubmed/36829693
http://dx.doi.org/10.3390/bioengineering10020199
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