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Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection

Compressed sensing in magnetic resonance imaging essentially involves the optimization of (1) the sampling pattern in k-space under MR hardware constraints and (2) image reconstruction from undersampled k-space data. Recently, deep learning methods have allowed the community to address both problems...

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Autores principales: Radhakrishna, Chaithya Giliyar, Ciuciu, Philippe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9952463/
https://www.ncbi.nlm.nih.gov/pubmed/36829652
http://dx.doi.org/10.3390/bioengineering10020158
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author Radhakrishna, Chaithya Giliyar
Ciuciu, Philippe
author_facet Radhakrishna, Chaithya Giliyar
Ciuciu, Philippe
author_sort Radhakrishna, Chaithya Giliyar
collection PubMed
description Compressed sensing in magnetic resonance imaging essentially involves the optimization of (1) the sampling pattern in k-space under MR hardware constraints and (2) image reconstruction from undersampled k-space data. Recently, deep learning methods have allowed the community to address both problems simultaneously, especially in the non-Cartesian acquisition setting. This work aims to contribute to this field by tackling some major concerns in existing approaches. Particularly, current state-of-the-art learning methods seek hardware compliant k-space sampling trajectories by enforcing the hardware constraints through additional penalty terms in the training loss. Through ablation studies, we rather show the benefit of using a projection step to enforce these constraints and demonstrate that the resulting k-space trajectories are more flexible under a projection-based scheme, which results in superior performance in reconstructed image quality. In 2D studies, our novel PROjection for Jointly lEarning non-Cartesian Trajectories while Optimizing Reconstructor (PROJeCTOR) trajectories present an improved image reconstruction quality at a 20-fold acceleration factor on the fastMRI data set with SSIM scores of nearly 0.92–0.95 in our retrospective studies as compared to the corresponding Cartesian reference and also see a 3–4 dB gain in PSNR as compared to earlier state-of-the-art methods. Finally, we extend the algorithm to 3D and by comparing optimization as learning-based projection schemes, we show that data-driven joint learning-based PROJeCTOR trajectories outperform model-based methods such as SPARKLING through a 2 dB gain in PSNR and 0.02 gain in SSIM.
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spelling pubmed-99524632023-02-25 Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection Radhakrishna, Chaithya Giliyar Ciuciu, Philippe Bioengineering (Basel) Article Compressed sensing in magnetic resonance imaging essentially involves the optimization of (1) the sampling pattern in k-space under MR hardware constraints and (2) image reconstruction from undersampled k-space data. Recently, deep learning methods have allowed the community to address both problems simultaneously, especially in the non-Cartesian acquisition setting. This work aims to contribute to this field by tackling some major concerns in existing approaches. Particularly, current state-of-the-art learning methods seek hardware compliant k-space sampling trajectories by enforcing the hardware constraints through additional penalty terms in the training loss. Through ablation studies, we rather show the benefit of using a projection step to enforce these constraints and demonstrate that the resulting k-space trajectories are more flexible under a projection-based scheme, which results in superior performance in reconstructed image quality. In 2D studies, our novel PROjection for Jointly lEarning non-Cartesian Trajectories while Optimizing Reconstructor (PROJeCTOR) trajectories present an improved image reconstruction quality at a 20-fold acceleration factor on the fastMRI data set with SSIM scores of nearly 0.92–0.95 in our retrospective studies as compared to the corresponding Cartesian reference and also see a 3–4 dB gain in PSNR as compared to earlier state-of-the-art methods. Finally, we extend the algorithm to 3D and by comparing optimization as learning-based projection schemes, we show that data-driven joint learning-based PROJeCTOR trajectories outperform model-based methods such as SPARKLING through a 2 dB gain in PSNR and 0.02 gain in SSIM. MDPI 2023-01-24 /pmc/articles/PMC9952463/ /pubmed/36829652 http://dx.doi.org/10.3390/bioengineering10020158 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Radhakrishna, Chaithya Giliyar
Ciuciu, Philippe
Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title_full Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title_fullStr Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title_full_unstemmed Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title_short Jointly Learning Non-Cartesian k-Space Trajectories and Reconstruction Networks for 2D and 3D MR Imaging through Projection
title_sort jointly learning non-cartesian k-space trajectories and reconstruction networks for 2d and 3d mr imaging through projection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9952463/
https://www.ncbi.nlm.nih.gov/pubmed/36829652
http://dx.doi.org/10.3390/bioengineering10020158
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