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Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade

Queuing networks (QNs) are essential models in operations research, with applications in cloud computing and healthcare systems. However, few studies have analyzed the cell’s biological signal transduction using QN theory. This study entailed the modeling of signal transduction as an open Jackson’s...

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Autor principal: Tsuruyama, Tatsuaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9955153/
https://www.ncbi.nlm.nih.gov/pubmed/36832692
http://dx.doi.org/10.3390/e25020326
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author Tsuruyama, Tatsuaki
author_facet Tsuruyama, Tatsuaki
author_sort Tsuruyama, Tatsuaki
collection PubMed
description Queuing networks (QNs) are essential models in operations research, with applications in cloud computing and healthcare systems. However, few studies have analyzed the cell’s biological signal transduction using QN theory. This study entailed the modeling of signal transduction as an open Jackson’s QN (JQN) to theoretically determine cell signal transduction, under the assumption that the signal mediator queues in the cytoplasm, and the mediator is exchanged from one signaling molecule to another through interactions between the signaling molecules. Each signaling molecule was regarded as a network node in the JQN. The JQN Kullback–Leibler divergence (KLD) was defined using the ratio of the queuing time (λ) to the exchange time (μ), λ/μ. The mitogen-activated protein kinase (MAPK) signal-cascade model was applied, and the KLD rate per signal-transduction-period was shown to be conserved when the KLD was maximized. Our experimental study on MAPK cascade supported this conclusion. This result is similar to the entropy-rate conservation of chemical kinetics and entropy coding reported in our previous studies. Thus, JQN can be used as a novel framework to analyze signal transduction.
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spelling pubmed-99551532023-02-25 Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade Tsuruyama, Tatsuaki Entropy (Basel) Article Queuing networks (QNs) are essential models in operations research, with applications in cloud computing and healthcare systems. However, few studies have analyzed the cell’s biological signal transduction using QN theory. This study entailed the modeling of signal transduction as an open Jackson’s QN (JQN) to theoretically determine cell signal transduction, under the assumption that the signal mediator queues in the cytoplasm, and the mediator is exchanged from one signaling molecule to another through interactions between the signaling molecules. Each signaling molecule was regarded as a network node in the JQN. The JQN Kullback–Leibler divergence (KLD) was defined using the ratio of the queuing time (λ) to the exchange time (μ), λ/μ. The mitogen-activated protein kinase (MAPK) signal-cascade model was applied, and the KLD rate per signal-transduction-period was shown to be conserved when the KLD was maximized. Our experimental study on MAPK cascade supported this conclusion. This result is similar to the entropy-rate conservation of chemical kinetics and entropy coding reported in our previous studies. Thus, JQN can be used as a novel framework to analyze signal transduction. MDPI 2023-02-10 /pmc/articles/PMC9955153/ /pubmed/36832692 http://dx.doi.org/10.3390/e25020326 Text en © 2023 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tsuruyama, Tatsuaki
Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title_full Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title_fullStr Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title_full_unstemmed Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title_short Kullback–Leibler Divergence of an Open-Queuing Network of a Cell-Signal-Transduction Cascade
title_sort kullback–leibler divergence of an open-queuing network of a cell-signal-transduction cascade
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9955153/
https://www.ncbi.nlm.nih.gov/pubmed/36832692
http://dx.doi.org/10.3390/e25020326
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