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Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network
MRI is the primary imaging approach for diagnosing prostate cancer. Prostate Imaging Reporting and Data System (PI-RADS) on multiparametric MRI (mpMRI) provides fundamental MRI interpretation guidelines but suffers from inter-reader variability. Deep learning networks show great promise in automatic...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9955952/ https://www.ncbi.nlm.nih.gov/pubmed/36832103 http://dx.doi.org/10.3390/diagnostics13040615 |
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author | Jiang, Wenting Lin, Yingying Vardhanabhuti, Varut Ming, Yanzhen Cao, Peng |
author_facet | Jiang, Wenting Lin, Yingying Vardhanabhuti, Varut Ming, Yanzhen Cao, Peng |
author_sort | Jiang, Wenting |
collection | PubMed |
description | MRI is the primary imaging approach for diagnosing prostate cancer. Prostate Imaging Reporting and Data System (PI-RADS) on multiparametric MRI (mpMRI) provides fundamental MRI interpretation guidelines but suffers from inter-reader variability. Deep learning networks show great promise in automatic lesion segmentation and classification, which help to ease the burden on radiologists and reduce inter-reader variability. In this study, we proposed a novel multi-branch network, MiniSegCaps, for prostate cancer segmentation and PI-RADS classification on mpMRI. MiniSeg branch outputted the segmentation in conjunction with PI-RADS prediction, guided by the attention map from the CapsuleNet. CapsuleNet branch exploited the relative spatial information of prostate cancer to anatomical structures, such as the zonal location of the lesion, which also reduced the sample size requirement in training due to its equivariance properties. In addition, a gated recurrent unit (GRU) is adopted to exploit spatial knowledge across slices, improving through-plane consistency. Based on the clinical reports, we established a prostate mpMRI database from 462 patients paired with radiologically estimated annotations. MiniSegCaps was trained and evaluated with fivefold cross-validation. On 93 testing cases, our model achieved a 0.712 dice coefficient on lesion segmentation, 89.18% accuracy, and 92.52% sensitivity on PI-RADS classification (PI-RADS ≥ 4) in patient-level evaluation, significantly outperforming existing methods. In addition, a graphical user interface (GUI) integrated into the clinical workflow can automatically produce diagnosis reports based on the results from MiniSegCaps. |
format | Online Article Text |
id | pubmed-9955952 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99559522023-02-25 Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network Jiang, Wenting Lin, Yingying Vardhanabhuti, Varut Ming, Yanzhen Cao, Peng Diagnostics (Basel) Article MRI is the primary imaging approach for diagnosing prostate cancer. Prostate Imaging Reporting and Data System (PI-RADS) on multiparametric MRI (mpMRI) provides fundamental MRI interpretation guidelines but suffers from inter-reader variability. Deep learning networks show great promise in automatic lesion segmentation and classification, which help to ease the burden on radiologists and reduce inter-reader variability. In this study, we proposed a novel multi-branch network, MiniSegCaps, for prostate cancer segmentation and PI-RADS classification on mpMRI. MiniSeg branch outputted the segmentation in conjunction with PI-RADS prediction, guided by the attention map from the CapsuleNet. CapsuleNet branch exploited the relative spatial information of prostate cancer to anatomical structures, such as the zonal location of the lesion, which also reduced the sample size requirement in training due to its equivariance properties. In addition, a gated recurrent unit (GRU) is adopted to exploit spatial knowledge across slices, improving through-plane consistency. Based on the clinical reports, we established a prostate mpMRI database from 462 patients paired with radiologically estimated annotations. MiniSegCaps was trained and evaluated with fivefold cross-validation. On 93 testing cases, our model achieved a 0.712 dice coefficient on lesion segmentation, 89.18% accuracy, and 92.52% sensitivity on PI-RADS classification (PI-RADS ≥ 4) in patient-level evaluation, significantly outperforming existing methods. In addition, a graphical user interface (GUI) integrated into the clinical workflow can automatically produce diagnosis reports based on the results from MiniSegCaps. MDPI 2023-02-07 /pmc/articles/PMC9955952/ /pubmed/36832103 http://dx.doi.org/10.3390/diagnostics13040615 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jiang, Wenting Lin, Yingying Vardhanabhuti, Varut Ming, Yanzhen Cao, Peng Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title | Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title_full | Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title_fullStr | Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title_full_unstemmed | Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title_short | Joint Cancer Segmentation and PI-RADS Classification on Multiparametric MRI Using MiniSegCaps Network |
title_sort | joint cancer segmentation and pi-rads classification on multiparametric mri using minisegcaps network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9955952/ https://www.ncbi.nlm.nih.gov/pubmed/36832103 http://dx.doi.org/10.3390/diagnostics13040615 |
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