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Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure

Constitutive-heterochromatin placement in the genome affects chromosome structure by occupying centromeric areas and forming large blocks. To investigate the basis for heterochromatin variation in the genome, we chose a group of species with a conserved euchromatin part: the genus Martes [stone mart...

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Autores principales: Beklemisheva, Violetta R., Lemskaya, Natalya A., Prokopov, Dmitry Yu., Perelman, Polina L., Romanenko, Svetlana A., Proskuryakova, Anastasia A., Serdyukova, Natalya A., Utkin, Yaroslav A., Nie, Wenhui, Ferguson-Smith, Malcolm A., Yang, Fentang, Graphodatsky, Alexander S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957230/
https://www.ncbi.nlm.nih.gov/pubmed/36833416
http://dx.doi.org/10.3390/genes14020489
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author Beklemisheva, Violetta R.
Lemskaya, Natalya A.
Prokopov, Dmitry Yu.
Perelman, Polina L.
Romanenko, Svetlana A.
Proskuryakova, Anastasia A.
Serdyukova, Natalya A.
Utkin, Yaroslav A.
Nie, Wenhui
Ferguson-Smith, Malcolm A.
Yang, Fentang
Graphodatsky, Alexander S.
author_facet Beklemisheva, Violetta R.
Lemskaya, Natalya A.
Prokopov, Dmitry Yu.
Perelman, Polina L.
Romanenko, Svetlana A.
Proskuryakova, Anastasia A.
Serdyukova, Natalya A.
Utkin, Yaroslav A.
Nie, Wenhui
Ferguson-Smith, Malcolm A.
Yang, Fentang
Graphodatsky, Alexander S.
author_sort Beklemisheva, Violetta R.
collection PubMed
description Constitutive-heterochromatin placement in the genome affects chromosome structure by occupying centromeric areas and forming large blocks. To investigate the basis for heterochromatin variation in the genome, we chose a group of species with a conserved euchromatin part: the genus Martes [stone marten (M. foina, 2n = 38), sable (M. zibellina, 2n = 38), pine marten (M. martes, 2n = 38), and yellow-throated marten (M. flavigula, 2n = 40)]. We mined the stone marten genome for the most abundant tandem repeats and selected the top 11 macrosatellite repetitive sequences. Fluorescent in situ hybridization revealed distributions of the tandemly repeated sequences (macrosatellites, telomeric repeats, and ribosomal DNA). We next characterized the AT/GC content of constitutive heterochromatin by CDAG (Chromomycin A3-DAPI-after G-banding). The euchromatin conservatism was shown by comparative chromosome painting with stone marten probes in newly built maps of the sable and pine marten. Thus, for the four Martes species, we mapped three different types of tandemly repeated sequences critical for chromosome structure. Most macrosatellites are shared by the four species with individual patterns of amplification. Some macrosatellites are specific to a species, autosomes, or the X chromosome. The variation of core macrosatellites and their prevalence in a genome are responsible for the species-specific variation of the heterochromatic blocks.
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spelling pubmed-99572302023-02-25 Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure Beklemisheva, Violetta R. Lemskaya, Natalya A. Prokopov, Dmitry Yu. Perelman, Polina L. Romanenko, Svetlana A. Proskuryakova, Anastasia A. Serdyukova, Natalya A. Utkin, Yaroslav A. Nie, Wenhui Ferguson-Smith, Malcolm A. Yang, Fentang Graphodatsky, Alexander S. Genes (Basel) Article Constitutive-heterochromatin placement in the genome affects chromosome structure by occupying centromeric areas and forming large blocks. To investigate the basis for heterochromatin variation in the genome, we chose a group of species with a conserved euchromatin part: the genus Martes [stone marten (M. foina, 2n = 38), sable (M. zibellina, 2n = 38), pine marten (M. martes, 2n = 38), and yellow-throated marten (M. flavigula, 2n = 40)]. We mined the stone marten genome for the most abundant tandem repeats and selected the top 11 macrosatellite repetitive sequences. Fluorescent in situ hybridization revealed distributions of the tandemly repeated sequences (macrosatellites, telomeric repeats, and ribosomal DNA). We next characterized the AT/GC content of constitutive heterochromatin by CDAG (Chromomycin A3-DAPI-after G-banding). The euchromatin conservatism was shown by comparative chromosome painting with stone marten probes in newly built maps of the sable and pine marten. Thus, for the four Martes species, we mapped three different types of tandemly repeated sequences critical for chromosome structure. Most macrosatellites are shared by the four species with individual patterns of amplification. Some macrosatellites are specific to a species, autosomes, or the X chromosome. The variation of core macrosatellites and their prevalence in a genome are responsible for the species-specific variation of the heterochromatic blocks. MDPI 2023-02-14 /pmc/articles/PMC9957230/ /pubmed/36833416 http://dx.doi.org/10.3390/genes14020489 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Beklemisheva, Violetta R.
Lemskaya, Natalya A.
Prokopov, Dmitry Yu.
Perelman, Polina L.
Romanenko, Svetlana A.
Proskuryakova, Anastasia A.
Serdyukova, Natalya A.
Utkin, Yaroslav A.
Nie, Wenhui
Ferguson-Smith, Malcolm A.
Yang, Fentang
Graphodatsky, Alexander S.
Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title_full Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title_fullStr Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title_full_unstemmed Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title_short Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure
title_sort maps of constitutive-heterochromatin distribution for four martes species (mustelidae, carnivora, mammalia) show the formative role of macrosatellite repeats in interspecific variation of chromosome structure
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957230/
https://www.ncbi.nlm.nih.gov/pubmed/36833416
http://dx.doi.org/10.3390/genes14020489
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