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Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elem...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957284/ https://www.ncbi.nlm.nih.gov/pubmed/36833184 http://dx.doi.org/10.3390/genes14020255 |
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author | Sun, Kuo Guan, De-Long Huang, Hua-Teng Xu, Sheng-Quan |
author_facet | Sun, Kuo Guan, De-Long Huang, Hua-Teng Xu, Sheng-Quan |
author_sort | Sun, Kuo |
collection | PubMed |
description | The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elements were also identified. The haploid genome size estimate is 3.14 Gb by flow cytometry, 3.17 Gb, and 3.77 Gb-based two k-mer methods, respectively, which is well within the range previously reported for other species of the suborder Ensifera. 56% of repetitive elements were found in G. orientalis, similar to 56.83% in Locusta migratoria. However, the great size of repetitive sequences could not be annotated to specific repeat element families. For the repetitive elements that were annotated, Class I-LINE retrotransposon elements were the most common families and more abundant than satellite and Class I-LTR. These results based on the newly developed genome survey could be used in the taxonomic study and whole genome sequencing to improve the understanding of the biology of G. orientalis. |
format | Online Article Text |
id | pubmed-9957284 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99572842023-02-25 Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis Sun, Kuo Guan, De-Long Huang, Hua-Teng Xu, Sheng-Quan Genes (Basel) Brief Report The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elements were also identified. The haploid genome size estimate is 3.14 Gb by flow cytometry, 3.17 Gb, and 3.77 Gb-based two k-mer methods, respectively, which is well within the range previously reported for other species of the suborder Ensifera. 56% of repetitive elements were found in G. orientalis, similar to 56.83% in Locusta migratoria. However, the great size of repetitive sequences could not be annotated to specific repeat element families. For the repetitive elements that were annotated, Class I-LINE retrotransposon elements were the most common families and more abundant than satellite and Class I-LTR. These results based on the newly developed genome survey could be used in the taxonomic study and whole genome sequencing to improve the understanding of the biology of G. orientalis. MDPI 2023-01-18 /pmc/articles/PMC9957284/ /pubmed/36833184 http://dx.doi.org/10.3390/genes14020255 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Brief Report Sun, Kuo Guan, De-Long Huang, Hua-Teng Xu, Sheng-Quan Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title | Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title_full | Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title_fullStr | Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title_full_unstemmed | Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title_short | Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis |
title_sort | genome survey sequencing of the mole cricket gryllotalpa orientalis |
topic | Brief Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957284/ https://www.ncbi.nlm.nih.gov/pubmed/36833184 http://dx.doi.org/10.3390/genes14020255 |
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