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Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis

The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elem...

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Autores principales: Sun, Kuo, Guan, De-Long, Huang, Hua-Teng, Xu, Sheng-Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957284/
https://www.ncbi.nlm.nih.gov/pubmed/36833184
http://dx.doi.org/10.3390/genes14020255
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author Sun, Kuo
Guan, De-Long
Huang, Hua-Teng
Xu, Sheng-Quan
author_facet Sun, Kuo
Guan, De-Long
Huang, Hua-Teng
Xu, Sheng-Quan
author_sort Sun, Kuo
collection PubMed
description The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elements were also identified. The haploid genome size estimate is 3.14 Gb by flow cytometry, 3.17 Gb, and 3.77 Gb-based two k-mer methods, respectively, which is well within the range previously reported for other species of the suborder Ensifera. 56% of repetitive elements were found in G. orientalis, similar to 56.83% in Locusta migratoria. However, the great size of repetitive sequences could not be annotated to specific repeat element families. For the repetitive elements that were annotated, Class I-LINE retrotransposon elements were the most common families and more abundant than satellite and Class I-LTR. These results based on the newly developed genome survey could be used in the taxonomic study and whole genome sequencing to improve the understanding of the biology of G. orientalis.
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spelling pubmed-99572842023-02-25 Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis Sun, Kuo Guan, De-Long Huang, Hua-Teng Xu, Sheng-Quan Genes (Basel) Brief Report The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elements were also identified. The haploid genome size estimate is 3.14 Gb by flow cytometry, 3.17 Gb, and 3.77 Gb-based two k-mer methods, respectively, which is well within the range previously reported for other species of the suborder Ensifera. 56% of repetitive elements were found in G. orientalis, similar to 56.83% in Locusta migratoria. However, the great size of repetitive sequences could not be annotated to specific repeat element families. For the repetitive elements that were annotated, Class I-LINE retrotransposon elements were the most common families and more abundant than satellite and Class I-LTR. These results based on the newly developed genome survey could be used in the taxonomic study and whole genome sequencing to improve the understanding of the biology of G. orientalis. MDPI 2023-01-18 /pmc/articles/PMC9957284/ /pubmed/36833184 http://dx.doi.org/10.3390/genes14020255 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Brief Report
Sun, Kuo
Guan, De-Long
Huang, Hua-Teng
Xu, Sheng-Quan
Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title_full Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title_fullStr Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title_full_unstemmed Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title_short Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis
title_sort genome survey sequencing of the mole cricket gryllotalpa orientalis
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957284/
https://www.ncbi.nlm.nih.gov/pubmed/36833184
http://dx.doi.org/10.3390/genes14020255
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