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The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)

Torix tukubana is a poorly understood proboscidate leech species, generally an ectoparasite on amphibian species. In this study, the complete mitochondrial genome (mitogenome) of T. tukubana was sequenced using next-generation sequencing (NGS), and the essential characteristics, gene arrangement, an...

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Autores principales: Zhu, Xiaochen, Zhao, Yingying, Wei, Hua, Hu, Nan, Hu, Qingbiao, Li, Yingdong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957428/
https://www.ncbi.nlm.nih.gov/pubmed/36833315
http://dx.doi.org/10.3390/genes14020388
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author Zhu, Xiaochen
Zhao, Yingying
Wei, Hua
Hu, Nan
Hu, Qingbiao
Li, Yingdong
author_facet Zhu, Xiaochen
Zhao, Yingying
Wei, Hua
Hu, Nan
Hu, Qingbiao
Li, Yingdong
author_sort Zhu, Xiaochen
collection PubMed
description Torix tukubana is a poorly understood proboscidate leech species, generally an ectoparasite on amphibian species. In this study, the complete mitochondrial genome (mitogenome) of T. tukubana was sequenced using next-generation sequencing (NGS), and the essential characteristics, gene arrangement, and phylogenetic relationship were analyzed. The results showed that the T. tukubana mitogenome was 14,814 bp in length, consisting of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, and 1 control region (CR). The mitogenome composition presented a strong A + T bias (73.6%). All tRNAs had the typical clover structure except the trnS1 (TCT), whose dihydrouridine (DHU) arm was short, having only one complementary base pair. Additionally, 8 gene order patterns were identified among 25 known Hirudinea species, and T. tukubana was identical to the Hirudinea ground pattern. A phylogenetic analysis based on 13 PCGs indicated that all the studied species clustered into three main clades. The relationships among Hirudinea species were basically consistent with their gene arrangement results, but different from their morphological taxonomy. T. tukubana was in the monophyletic group of Glossiphoniidae, a finding consistent with previous research. Our results provided the essential characteristics of the T. tukubana mitogenome. As the first complete mitogenome of Torix, it could offer valuable information for a systematic understanding of the Hirudinea species.
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spelling pubmed-99574282023-02-25 The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae) Zhu, Xiaochen Zhao, Yingying Wei, Hua Hu, Nan Hu, Qingbiao Li, Yingdong Genes (Basel) Article Torix tukubana is a poorly understood proboscidate leech species, generally an ectoparasite on amphibian species. In this study, the complete mitochondrial genome (mitogenome) of T. tukubana was sequenced using next-generation sequencing (NGS), and the essential characteristics, gene arrangement, and phylogenetic relationship were analyzed. The results showed that the T. tukubana mitogenome was 14,814 bp in length, consisting of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, and 1 control region (CR). The mitogenome composition presented a strong A + T bias (73.6%). All tRNAs had the typical clover structure except the trnS1 (TCT), whose dihydrouridine (DHU) arm was short, having only one complementary base pair. Additionally, 8 gene order patterns were identified among 25 known Hirudinea species, and T. tukubana was identical to the Hirudinea ground pattern. A phylogenetic analysis based on 13 PCGs indicated that all the studied species clustered into three main clades. The relationships among Hirudinea species were basically consistent with their gene arrangement results, but different from their morphological taxonomy. T. tukubana was in the monophyletic group of Glossiphoniidae, a finding consistent with previous research. Our results provided the essential characteristics of the T. tukubana mitogenome. As the first complete mitogenome of Torix, it could offer valuable information for a systematic understanding of the Hirudinea species. MDPI 2023-02-01 /pmc/articles/PMC9957428/ /pubmed/36833315 http://dx.doi.org/10.3390/genes14020388 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhu, Xiaochen
Zhao, Yingying
Wei, Hua
Hu, Nan
Hu, Qingbiao
Li, Yingdong
The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title_full The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title_fullStr The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title_full_unstemmed The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title_short The Complete Mitochondrial Genome of Torix tukubana (Annelida: Hirudinea: Glossiphoniidae)
title_sort complete mitochondrial genome of torix tukubana (annelida: hirudinea: glossiphoniidae)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9957428/
https://www.ncbi.nlm.nih.gov/pubmed/36833315
http://dx.doi.org/10.3390/genes14020388
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