Cargando…
Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of p...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958192/ https://www.ncbi.nlm.nih.gov/pubmed/36828854 http://dx.doi.org/10.1038/s41598-023-28488-1 |
_version_ | 1784894974021599232 |
---|---|
author | Yu, Hang Xiong, Lingling Li, Yanmei Wei, Yunlin Zhang, Qi Li, Haiyan Chen, Wei Ji, Xiuling |
author_facet | Yu, Hang Xiong, Lingling Li, Yanmei Wei, Yunlin Zhang, Qi Li, Haiyan Chen, Wei Ji, Xiuling |
author_sort | Yu, Hang |
collection | PubMed |
description | Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell. |
format | Online Article Text |
id | pubmed-9958192 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99581922023-02-26 Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland Yu, Hang Xiong, Lingling Li, Yanmei Wei, Yunlin Zhang, Qi Li, Haiyan Chen, Wei Ji, Xiuling Sci Rep Article Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell. Nature Publishing Group UK 2023-02-24 /pmc/articles/PMC9958192/ /pubmed/36828854 http://dx.doi.org/10.1038/s41598-023-28488-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yu, Hang Xiong, Lingling Li, Yanmei Wei, Yunlin Zhang, Qi Li, Haiyan Chen, Wei Ji, Xiuling Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title | Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title_full | Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title_fullStr | Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title_full_unstemmed | Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title_short | Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland |
title_sort | genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in napahai plateau wetland |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958192/ https://www.ncbi.nlm.nih.gov/pubmed/36828854 http://dx.doi.org/10.1038/s41598-023-28488-1 |
work_keys_str_mv | AT yuhang geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT xionglingling geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT liyanmei geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT weiyunlin geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT zhangqi geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT lihaiyan geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT chenwei geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland AT jixiuling geneticdiversityofvirusauxiliarymetabolismgenesassociatedwithphosphorusmetabolisminnapahaiplateauwetland |