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Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland

Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of p...

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Autores principales: Yu, Hang, Xiong, Lingling, Li, Yanmei, Wei, Yunlin, Zhang, Qi, Li, Haiyan, Chen, Wei, Ji, Xiuling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958192/
https://www.ncbi.nlm.nih.gov/pubmed/36828854
http://dx.doi.org/10.1038/s41598-023-28488-1
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author Yu, Hang
Xiong, Lingling
Li, Yanmei
Wei, Yunlin
Zhang, Qi
Li, Haiyan
Chen, Wei
Ji, Xiuling
author_facet Yu, Hang
Xiong, Lingling
Li, Yanmei
Wei, Yunlin
Zhang, Qi
Li, Haiyan
Chen, Wei
Ji, Xiuling
author_sort Yu, Hang
collection PubMed
description Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell.
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spelling pubmed-99581922023-02-26 Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland Yu, Hang Xiong, Lingling Li, Yanmei Wei, Yunlin Zhang, Qi Li, Haiyan Chen, Wei Ji, Xiuling Sci Rep Article Viruses play important roles in ecosystems by interfering with the central metabolic pathways of the host during infection via the expression of auxiliary metabolic genes (AMGs), altering the productivity of ecosystems and thus affecting geochemical cycling. In this study, the genetic diversity of phosphorus metabolism AMGs phoH, phoU and pstS was investigated by phylogenetic analysis, PCoA analysis, and alpha diversity analysis based on metagenomic data. It was found that the majority of the sequences were unique to Napahai plateau wetland. It was shown that the genetic diversity of phoH, phoU and pstS genes was independent of both habitats and host origins. In addition, the metabolic pathway of AMGs associated with the phosphorus cycling was identified based on metagenomic data. When phosphorus is deficient, virus utilizes AMGs to affect the metabolic pathway, contributing to higher phosphorus levels in the host and facilitating virus survival, replication, and propagation in the host cell. Nature Publishing Group UK 2023-02-24 /pmc/articles/PMC9958192/ /pubmed/36828854 http://dx.doi.org/10.1038/s41598-023-28488-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yu, Hang
Xiong, Lingling
Li, Yanmei
Wei, Yunlin
Zhang, Qi
Li, Haiyan
Chen, Wei
Ji, Xiuling
Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title_full Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title_fullStr Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title_full_unstemmed Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title_short Genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in Napahai plateau wetland
title_sort genetic diversity of virus auxiliary metabolism genes associated with phosphorus metabolism in napahai plateau wetland
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958192/
https://www.ncbi.nlm.nih.gov/pubmed/36828854
http://dx.doi.org/10.1038/s41598-023-28488-1
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