Cargando…

Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer

BACKGROUND: Hsa_circ_0072309 has been identified as a tumor suppressor in several carcinomas. However, its precise role in gastric cancer (GC) remains largely unknown. This study was aimed to explore the precise role of Hsa_circ_0072309 in GC. METHODS: The transcriptional and clinical data of stomac...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Bei-Bei, Huang, Yi, Zheng, En-Dian, Wang, Jing-Ya, Zhang, Chen-Jing, Geng, Xiao-Ge, Wang, Ya-Nan, Pan, Wen-Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958299/
https://www.ncbi.nlm.nih.gov/pubmed/36852074
http://dx.doi.org/10.1016/j.heliyon.2023.e13191
_version_ 1784894991794962432
author Xu, Bei-Bei
Huang, Yi
Zheng, En-Dian
Wang, Jing-Ya
Zhang, Chen-Jing
Geng, Xiao-Ge
Wang, Ya-Nan
Pan, Wen-Sheng
author_facet Xu, Bei-Bei
Huang, Yi
Zheng, En-Dian
Wang, Jing-Ya
Zhang, Chen-Jing
Geng, Xiao-Ge
Wang, Ya-Nan
Pan, Wen-Sheng
author_sort Xu, Bei-Bei
collection PubMed
description BACKGROUND: Hsa_circ_0072309 has been identified as a tumor suppressor in several carcinomas. However, its precise role in gastric cancer (GC) remains largely unknown. This study was aimed to explore the precise role of Hsa_circ_0072309 in GC. METHODS: The transcriptional and clinical data of stomach adenocarcinoma were downloaded using the University of California SantaCruz (UCSC) Xena browser. The circular RNA (circRNA) datasets were obtained from the Gene Expression Omnibus (GEO) database. The expression profile and survival analysis of differentially expressed micro RNAs (DEMIs) and differentially expressed messenger RNAs (DEMs) were performed. Correlations between the expression and immune infiltration of the DEMS were studied. Additionally, the expression of hsa_circ_0072309 in GC tissues and cell lines were validated, and the relationship between its expression and clinical features was investigated. Gain- and loss-of function experiments and molecular interaction experiments were also conducted. RESULTS: Overall, 7 differentially expressed circRNAs, 13 DEMIs, and 17 DEMs were screened. Two DEMIs (hsa_miR-34a-3p and hsa_miR-326) and five DEMs (C7, MARCKSL1, UBE2T, OLR1, and HOXC11) showed significant differences in the high- and low-risk groups. The most significantly enriched Gene Ontology terms were the circadian regulation of gene expression and protein binding. The most significantly enriched Kyoto Encyclopedia of Genes and Genomes pathways were the PI3K-Akt and Ras signal pathways. Additionally, six genes were significantly correlated with immune infiltration. The real-time quantitative PCR (RT-qPCR) results revealed a significant downregulation of hsa_circ_0072309 in GC tissues related to tumor size, vascular invasion, and lymph node metastasis. A hsa_circ_0072309 overexpression suppressed whereas a hsa_circ_0072309 knockdown promoted GC cells proliferation and migration in vitro; in addition, hsa_circ_0072309 could directly bind to has-miR-34a-3p and has-miR-330-5p. CONCLUSIONS: Hsa_circ_0072309 is a potential diagnostic biomarker for GC, and complement component 7 may be a tumor suppressor. These may potentially predict the prognosis of patients with GC and may become new therapeutic targets.
format Online
Article
Text
id pubmed-9958299
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-99582992023-02-26 Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer Xu, Bei-Bei Huang, Yi Zheng, En-Dian Wang, Jing-Ya Zhang, Chen-Jing Geng, Xiao-Ge Wang, Ya-Nan Pan, Wen-Sheng Heliyon Research Article BACKGROUND: Hsa_circ_0072309 has been identified as a tumor suppressor in several carcinomas. However, its precise role in gastric cancer (GC) remains largely unknown. This study was aimed to explore the precise role of Hsa_circ_0072309 in GC. METHODS: The transcriptional and clinical data of stomach adenocarcinoma were downloaded using the University of California SantaCruz (UCSC) Xena browser. The circular RNA (circRNA) datasets were obtained from the Gene Expression Omnibus (GEO) database. The expression profile and survival analysis of differentially expressed micro RNAs (DEMIs) and differentially expressed messenger RNAs (DEMs) were performed. Correlations between the expression and immune infiltration of the DEMS were studied. Additionally, the expression of hsa_circ_0072309 in GC tissues and cell lines were validated, and the relationship between its expression and clinical features was investigated. Gain- and loss-of function experiments and molecular interaction experiments were also conducted. RESULTS: Overall, 7 differentially expressed circRNAs, 13 DEMIs, and 17 DEMs were screened. Two DEMIs (hsa_miR-34a-3p and hsa_miR-326) and five DEMs (C7, MARCKSL1, UBE2T, OLR1, and HOXC11) showed significant differences in the high- and low-risk groups. The most significantly enriched Gene Ontology terms were the circadian regulation of gene expression and protein binding. The most significantly enriched Kyoto Encyclopedia of Genes and Genomes pathways were the PI3K-Akt and Ras signal pathways. Additionally, six genes were significantly correlated with immune infiltration. The real-time quantitative PCR (RT-qPCR) results revealed a significant downregulation of hsa_circ_0072309 in GC tissues related to tumor size, vascular invasion, and lymph node metastasis. A hsa_circ_0072309 overexpression suppressed whereas a hsa_circ_0072309 knockdown promoted GC cells proliferation and migration in vitro; in addition, hsa_circ_0072309 could directly bind to has-miR-34a-3p and has-miR-330-5p. CONCLUSIONS: Hsa_circ_0072309 is a potential diagnostic biomarker for GC, and complement component 7 may be a tumor suppressor. These may potentially predict the prognosis of patients with GC and may become new therapeutic targets. Elsevier 2023-02-04 /pmc/articles/PMC9958299/ /pubmed/36852074 http://dx.doi.org/10.1016/j.heliyon.2023.e13191 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Xu, Bei-Bei
Huang, Yi
Zheng, En-Dian
Wang, Jing-Ya
Zhang, Chen-Jing
Geng, Xiao-Ge
Wang, Ya-Nan
Pan, Wen-Sheng
Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title_full Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title_fullStr Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title_full_unstemmed Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title_short Hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
title_sort hsa_circ_0072309 is a prognostic biomarker and is correlated with immune infiltration in gastric cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958299/
https://www.ncbi.nlm.nih.gov/pubmed/36852074
http://dx.doi.org/10.1016/j.heliyon.2023.e13191
work_keys_str_mv AT xubeibei hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT huangyi hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT zhengendian hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT wangjingya hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT zhangchenjing hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT gengxiaoge hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT wangyanan hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer
AT panwensheng hsacirc0072309isaprognosticbiomarkerandiscorrelatedwithimmuneinfiltrationingastriccancer