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Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma
Optic nerve invasion (ONI) is an important high-risk feature and prognostic indicator of retinoblastoma (RB). Emerging evidence has revealed that non-coding RNAs (ncRNAs) play important roles in tumor perineural invasion (PNI). Nevertheless, the regulatory role of ncRNAs in the ONI of RB is poorly u...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958441/ https://www.ncbi.nlm.nih.gov/pubmed/36852072 http://dx.doi.org/10.1016/j.heliyon.2023.e13813 |
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author | Sun, Jie Gan, Lu Ding, Jie Ma, Ruiqi Qian, Jiang Xue, Kang |
author_facet | Sun, Jie Gan, Lu Ding, Jie Ma, Ruiqi Qian, Jiang Xue, Kang |
author_sort | Sun, Jie |
collection | PubMed |
description | Optic nerve invasion (ONI) is an important high-risk feature and prognostic indicator of retinoblastoma (RB). Emerging evidence has revealed that non-coding RNAs (ncRNAs) play important roles in tumor perineural invasion (PNI). Nevertheless, the regulatory role of ncRNAs in the ONI of RB is poorly understood. In the current study, whole-transcriptome sequencing was performed to assess the expression profiles of ncRNAs and mRNAs in RB tissues, with or without ONI. Based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, we predicted the biological functions of differentially expressed (DE) mRNAs. We then constructed competing endogenous RNA (ceRNA) regulatory networks based on bioinformatics analysis. The hsa_circ_0015965/lncRNA MEG3-hsa-miR-378a-5p-NOTCH1 pathway was selected and validated by real-time qPCR, western blotting, and dual luciferase reporter assays. Moreover, we demonstrated that NOTCH1 promotes the malignant progression of RB. Taken together, our results provide novel insights into the mechanism underlying optic nerve invasion in RB. |
format | Online Article Text |
id | pubmed-9958441 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-99584412023-02-26 Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma Sun, Jie Gan, Lu Ding, Jie Ma, Ruiqi Qian, Jiang Xue, Kang Heliyon Research Article Optic nerve invasion (ONI) is an important high-risk feature and prognostic indicator of retinoblastoma (RB). Emerging evidence has revealed that non-coding RNAs (ncRNAs) play important roles in tumor perineural invasion (PNI). Nevertheless, the regulatory role of ncRNAs in the ONI of RB is poorly understood. In the current study, whole-transcriptome sequencing was performed to assess the expression profiles of ncRNAs and mRNAs in RB tissues, with or without ONI. Based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, we predicted the biological functions of differentially expressed (DE) mRNAs. We then constructed competing endogenous RNA (ceRNA) regulatory networks based on bioinformatics analysis. The hsa_circ_0015965/lncRNA MEG3-hsa-miR-378a-5p-NOTCH1 pathway was selected and validated by real-time qPCR, western blotting, and dual luciferase reporter assays. Moreover, we demonstrated that NOTCH1 promotes the malignant progression of RB. Taken together, our results provide novel insights into the mechanism underlying optic nerve invasion in RB. Elsevier 2023-02-16 /pmc/articles/PMC9958441/ /pubmed/36852072 http://dx.doi.org/10.1016/j.heliyon.2023.e13813 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Sun, Jie Gan, Lu Ding, Jie Ma, Ruiqi Qian, Jiang Xue, Kang Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title | Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title_full | Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title_fullStr | Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title_full_unstemmed | Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title_short | Identification of non-coding RNAs and their functional network associated with optic nerve invasion in retinoblastoma |
title_sort | identification of non-coding rnas and their functional network associated with optic nerve invasion in retinoblastoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958441/ https://www.ncbi.nlm.nih.gov/pubmed/36852072 http://dx.doi.org/10.1016/j.heliyon.2023.e13813 |
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